RetrogeneDB - Parental gene ENSRNOG00000011138 details

                            
>ENSRNOG00000011138
ATGGCCAAGTCCAAGAACCACACCACACACAACCAGTCCCGCAAATGGCACAGAAATGGCATCAAGAAACCCCGGTCACA

AAGATACGAATCTCTTAAAGGGGTCGACCCCAAGTTTCTGAGGAACATGCGCTTTGCCAAGAAGCACAACAAGAAAGGCC

TGAAGAAGATGCAGGCCAACAATGCCAAGGCAGTGAGTGCACGAGCAGAGGCCATCAAGGCCCTCGTGAAGCCTCAGGCT

GTCAAGCCCAAGATGCCAAAGGGCTCCAGCCGCAAACTCAGCCGTCTGGCTTTCATCGCTCACCCCAAGCTTGGGAAGAA

GATTCGAAGCTACATGGCCAAGGGTCGTAGGCTCTGCCAACCAAAGCCCAAGGTTCAAACCAAGGCAGAGGCCAAAGCTC

CAGCTAAGGCCCAGGCCAAAGCTCCAGCCCAGGCTCCCAAGGGTGCCCAGGCCCCTGTGAAGGCCCCATAG

Library	Parental gene expression (RPM)
SRP017611_brain	73 .62 RPM
SRP017611_kidney	112 .84 RPM
SRP017611_liver	62 .60 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000009163	possible_ortholog	6 retrogenes	retro_amel_1373, retro_amel_1740, retro_amel_345, retro_amel_379, retro_amel_686, retro_amel_913,
Bos taurus	ENSBTAG00000018628	possible_ortholog	1 retrogene	retro_btau_982,
Callithrix jacchus	ENSCJAG00000005951	possible_ortholog	9 retrogenes	retro_cjac_135, retro_cjac_160, retro_cjac_241, retro_cjac_29, retro_cjac_331, retro_cjac_348, retro_cjac_358, retro_cjac_73, retro_cjac_96,
Cavia porcellus	ENSCPOG00000011738	ortholog_one2many	1 retrogene	retro_cpor_1509,
Dasypus novemcinctus	ENSDNOG00000000209	possible_ortholog	7 retrogenes	retro_dnov_1743, retro_dnov_1900, retro_dnov_1923, retro_dnov_1952, retro_dnov_2050, retro_dnov_2163, retro_dnov_2614,
Equus caballus	ENSECAG00000007397	possible_ortholog	2 retrogenes	retro_ecab_766, retro_ecab_904,
Felis catus	ENSFCAG00000001762	possible_ortholog	9 retrogenes	retro_fcat_1032, retro_fcat_1132, retro_fcat_1753, retro_fcat_1774, retro_fcat_1897, retro_fcat_249, retro_fcat_485, retro_fcat_687, retro_fcat_952,
Homo sapiens	ENSG00000162244	possible_ortholog	23 retrogenes	retro_hsap_1098, retro_hsap_1146, retro_hsap_123, retro_hsap_1283, retro_hsap_1406, retro_hsap_1587, retro_hsap_170, retro_hsap_1759, retro_hsap_2053, retro_hsap_2358, retro_hsap_263, retro_hsap_2772, retro_hsap_2899, retro_hsap_3201, retro_hsap_3289, retro_hsap_3316, retro_hsap_3511, retro_hsap_3562, retro_hsap_3951, retro_hsap_3998, retro_hsap_4304, retro_hsap_863, retro_hsap_882,
Gorilla gorilla	ENSGGOG00000024691	possible_ortholog	16 retrogenes	retro_ggor_1007, retro_ggor_1090, retro_ggor_1205, retro_ggor_1315, retro_ggor_1330, retro_ggor_142, retro_ggor_1480, retro_ggor_1929, retro_ggor_224, retro_ggor_2247, retro_ggor_254, retro_ggor_2684, retro_ggor_312, retro_ggor_715, retro_ggor_863, retro_ggor_892,
Loxodonta africana	ENSLAFG00000005757	possible_ortholog	5 retrogenes	retro_lafr_164, retro_lafr_184, retro_lafr_257, retro_lafr_461, retro_lafr_831,
Microcebus murinus	ENSMICG00000002705	possible_ortholog	9 retrogenes	retro_mmur_192, retro_mmur_198, retro_mmur_303, retro_mmur_446, retro_mmur_508, retro_mmur_519, retro_mmur_657, retro_mmur_816, retro_mmur_938,
Myotis lucifugus	ENSMLUG00000015088	possible_ortholog	14 retrogenes	retro_mluc_1086, retro_mluc_1160, retro_mluc_134, retro_mluc_1377, retro_mluc_1699, retro_mluc_1955, retro_mluc_2228, retro_mluc_2522, retro_mluc_2523, retro_mluc_2575, retro_mluc_297, retro_mluc_421, retro_mluc_889, retro_mluc_915,
Macaca mulatta	ENSMMUG00000019248	possible_ortholog	2 retrogenes	retro_mmul_1352, retro_mmul_218,
Monodelphis domestica	ENSMODG00000028750	ortholog_many2many	17 retrogenes	retro_mdom_1013, retro_mdom_1187, retro_mdom_1201, retro_mdom_1328, retro_mdom_1445, retro_mdom_1452, retro_mdom_1505, retro_mdom_1532, retro_mdom_1604, retro_mdom_1665, retro_mdom_1904, retro_mdom_35, retro_mdom_504, retro_mdom_589, retro_mdom_612, retro_mdom_639, retro_mdom_995,
Mustela putorius furo	ENSMPUG00000011734	possible_ortholog	6 retrogenes	retro_mputfur_137, retro_mputfur_187, retro_mputfur_370, retro_mputfur_467, retro_mputfur_816, retro_mputfur_970,
Otolemur garnettii	ENSOGAG00000013766	possible_ortholog	2 retrogenes	retro_ogar_290, retro_ogar_31,
Ochotona princeps	ENSOPRG00000008821	possible_ortholog	10 retrogenes	retro_opri_1166, retro_opri_277, retro_opri_373, retro_opri_535, retro_opri_607, retro_opri_69, retro_opri_700, retro_opri_877, retro_opri_983, retro_opri_99,
Procavia capensis	ENSPCAG00000009712	possible_ortholog	4 retrogenes	retro_pcap_100, retro_pcap_101, retro_pcap_44, retro_pcap_97,
Pongo abelii	ENSPPYG00000013818	possible_ortholog	21 retrogenes	retro_pabe_1062, retro_pabe_1162, retro_pabe_1306, retro_pabe_1503, retro_pabe_1714, retro_pabe_1882, retro_pabe_2125, retro_pabe_2131, retro_pabe_2398, retro_pabe_2718, retro_pabe_2952, retro_pabe_3254, retro_pabe_3284, retro_pabe_3504, retro_pabe_3525, retro_pabe_404, retro_pabe_459, retro_pabe_491, retro_pabe_673, retro_pabe_687, retro_pabe_911,
Sorex araneus	ENSSARG00000013572	ortholog_many2many	8 retrogenes	retro_sara_108, retro_sara_309, retro_sara_329, retro_sara_347, retro_sara_400, retro_sara_53, retro_sara_637, retro_sara_669,
Sarcophilus harrisii	ENSSHAG00000006854	ortholog_one2many	2 retrogenes	retro_shar_355, retro_shar_444,
Sus scrofa	ENSSSCG00000027573	possible_ortholog	7 retrogenes	retro_sscr_179, retro_sscr_182, retro_sscr_205, retro_sscr_206, retro_sscr_207, retro_sscr_208, retro_sscr_720,
Ictidomys tridecemlineatus	ENSSTOG00000020488	ortholog_many2many	14 retrogenes	retro_itri_1345, retro_itri_1433, retro_itri_1482, retro_itri_1586, retro_itri_1664, retro_itri_1667, retro_itri_194, retro_itri_482, retro_itri_520, retro_itri_592, retro_itri_622, retro_itri_874, retro_itri_934, retro_itri_942,
Tursiops truncatus	ENSTTRG00000003514	possible_ortholog	5 retrogenes	retro_ttru_1933, retro_ttru_213, retro_ttru_409, retro_ttru_449, retro_ttru_985,
Vicugna pacos	ENSVPAG00000001282	possible_ortholog	29 retrogenes	retro_vpac_102, retro_vpac_110, retro_vpac_120, retro_vpac_148, retro_vpac_155, retro_vpac_176, retro_vpac_188, retro_vpac_199, retro_vpac_243, retro_vpac_264, retro_vpac_28, retro_vpac_302, retro_vpac_305, retro_vpac_317, retro_vpac_325, retro_vpac_40, retro_vpac_401, retro_vpac_41, retro_vpac_416, retro_vpac_453, retro_vpac_462, retro_vpac_481, retro_vpac_547, retro_vpac_575, retro_vpac_58, retro_vpac_60, retro_vpac_602, retro_vpac_636, retro_vpac_98,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_rnor_63	98.72	100.00	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_rnor_184	94.23	100.00	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_rnor_338	85.71	98.72	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_rnor_397	85.52	92.95	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_rnor_928	81.13	100.00	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_rnor_1045	82.05	100.00	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_rnor_1158	83.33	100.00	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_rnor_1161	56.93	87.18	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_rnor_1422	78.21	100.00	Please wait, loading	Please wait, loading	Please wait, loading
10.	retro_rnor_1702	69.18	100.00	Please wait, loading	Please wait, loading	Please wait, loading
11.	retro_rnor_1951	86.88	100.00	Please wait, loading	Please wait, loading	Please wait, loading
12.	retro_rnor_2207	77.56	100.00	Please wait, loading	Please wait, loading	Please wait, loading
13.	retro_rnor_2222	79.62	100.00	Please wait, loading	Please wait, loading	Please wait, loading
14.	retro_rnor_2356	89.74	100.00	Please wait, loading	Please wait, loading	Please wait, loading
15.	retro_rnor_2561	75.47	100.00	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSRNOG00000011138 retrocopies

Parental gene:	Rpl29, ENSRNOG00000011138
Aliases:	None
Description:	60S ribosomal protein L29 [Source:UniProtKB/Swiss-Prot;Acc:P25886]
Organism:	*Rat (Rattus norvegicus)*
Coordinates:	8:114495443..114497490(+)

Parental gene:

Rpl29, ENSRNOG00000011138