Parental gene:

RPS6, ENSRNOG00000007663

Aliases:None
Description:40S ribosomal protein S6 [Source:UniProtKB/Swiss-Prot;Acc:P62755]
Organism:Rat (Rattus norvegicus)
Coordinates:5:109196749..109199600(-)


>ENSRNOG00000007663
ATGAAGCTGAATATCTCCTTCCCTGCCACTGGCTGTCAGAAACTCATAGAAGTGGATGACGAACGCAAGCTTCGTACGTT
CTATGAGAAGCGCATGGCCACAGAAGTAGCTGCTGATGCTCTTGGTGAAGAGTGGAAGGGTTATGTGGTCCGGATCAGCG
GTGGGAATGACAAACAAGGTTTTCCCATGAAGCAAGGCGTTTTGACCCATGGCAGAGTGCGCCTGCTTTTGAGTAAGGGG
CATTCTTGTTATAGACCTAGGAGAACTGGAGAGAGGAAGCGCAAGTCTGTCCGAGGATGCATTGTGGATGCCAACCTGAG
TGTTCTCAACTTGGTTATTGTAAAAAAAGGAGAGAAGGATATTCCAGGACTGACAGATACCACTGTGCCTCGTCGGTTGG
GACCTAAAAGAGCTAGTAGAATCCGAAAGCTTTTTAATCTCTCCAAAGAAGATGATGTCCGCCAGTATGTTGTCAGAAAG
CCCTTAAACAAAGAAGGTAAGAAGCCCAGGACCAAAGCGCCCAAGATTCAGCGTCTTGTTACTCCCCGTGTCCTGCAACA
CAAACGCCGACGTATTGCTCTGAAGAAGCAACGCACTAAGAAAAACAAGGAGGAGGCTGCAGAATATGCTAAACTTTTGG
CCAAGAGAATGAAGGAAGCCAAAGAGAAGCGCCAGGAACAGATTGCCAAGAGACGTAGGCTGTCTTCGCTGAGAGCTTCT
ACTTCTAAATCTGAGTCCAGTCAAAAATAA

Library Parental gene expression (RPM)
SRP017611_brain 0 .14 RPM
SRP017611_kidney 0 .00 RPM
SRP017611_liver 0 .07 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000017634 possible_ortholog 1 retrogene
retro_acar_20,
Cavia porcellus ENSCPOG00000003750 possible_ortholog 4 retrogenes
retro_cpor_1244, retro_cpor_22, retro_cpor_317, retro_cpor_486,
Echinops telfairi ENSETEG00000001584 ortholog_one2one 18 retrogenes
retro_etel_1143, retro_etel_1281, retro_etel_1410, retro_etel_1430, retro_etel_1575, retro_etel_167, retro_etel_1822, retro_etel_188, retro_etel_1964, retro_etel_2004, retro_etel_2041, retro_etel_2194, retro_etel_263, retro_etel_337, retro_etel_378, retro_etel_541, retro_etel_809, retro_etel_825,
Ficedula albicollis ENSFALG00000003078 possible_ortholog 1 retrogene
retro_falb_24,
Homo sapiens ENSG00000137154 ortholog_one2one 16 retrogenes
retro_hsap_1009, retro_hsap_1067, retro_hsap_1231, retro_hsap_1310, retro_hsap_1967, retro_hsap_2184, retro_hsap_2298, retro_hsap_3045, retro_hsap_3996, retro_hsap_4122, retro_hsap_4235, retro_hsap_4279, retro_hsap_4860, retro_hsap_731, retro_hsap_818, retro_hsap_966,
Loxodonta africana ENSLAFG00000010766 possible_ortholog 4 retrogenes
retro_lafr_1021, retro_lafr_1239, retro_lafr_59, retro_lafr_667,
Myotis lucifugus ENSMLUG00000007588 possible_ortholog 27 retrogenes
retro_mluc_1041, retro_mluc_1146, retro_mluc_1169, retro_mluc_1393, retro_mluc_1411, retro_mluc_1448, retro_mluc_1472, retro_mluc_1532, retro_mluc_1566, retro_mluc_1593, retro_mluc_1629, retro_mluc_1635, retro_mluc_1723, retro_mluc_1799, retro_mluc_1909, retro_mluc_1928, retro_mluc_1933, retro_mluc_2110, retro_mluc_2129, retro_mluc_490, retro_mluc_493, retro_mluc_514, retro_mluc_557, retro_mluc_652, retro_mluc_678, retro_mluc_722, retro_mluc_830,
Monodelphis domestica ENSMODG00000004095 possible_ortholog 1 retrogene
retro_mdom_301,
Ochotona princeps ENSOPRG00000012290 possible_ortholog 5 retrogenes
retro_opri_123, retro_opri_642, retro_opri_78, retro_opri_862, retro_opri_895,
Pan troglodytes ENSPTRG00000039153 ortholog_one2one 19 retrogenes
retro_ptro_1313, retro_ptro_1442, retro_ptro_1627, retro_ptro_1662, retro_ptro_1994, retro_ptro_2442, retro_ptro_2713, retro_ptro_2799, retro_ptro_2878, retro_ptro_2902, retro_ptro_2938, retro_ptro_3235, retro_ptro_519, retro_ptro_569, retro_ptro_669, retro_ptro_749, retro_ptro_785, retro_ptro_799, retro_ptro_845,
Rattus norvegicus ENSRNOG00000049025 within_species_paralog 8 retrogenes
retro_rnor_1008, retro_rnor_1189, retro_rnor_1988, retro_rnor_1990, retro_rnor_2085, retro_rnor_2635, retro_rnor_479, retro_rnor_718,
Sorex araneus ENSSARG00000006549 ortholog_one2one 6 retrogenes
retro_sara_284, retro_sara_369, retro_sara_392, retro_sara_436, retro_sara_512, retro_sara_710,
Sarcophilus harrisii ENSSHAG00000005486 possible_ortholog 1 retrogene
retro_shar_549,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_558 61.14 66.67
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2. retro_rnor_756 58.74 79.52
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3. retro_rnor_896 56.77 73.90
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4. retro_rnor_942 65.92 69.48
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5. retro_rnor_943 65.92 69.48
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6. retro_rnor_1092 57.58 65.46
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7. retro_rnor_1093 56.31 87.95
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8. retro_rnor_1269 92.26 62.25
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9. retro_rnor_1484 78.72 93.98
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10. retro_rnor_1556 68.49 57.43
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11. retro_rnor_1564 69.03 61.45
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12. retro_rnor_1845 52.56 60.64
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13. retro_rnor_1901 81.25 76.31
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14. retro_rnor_1991 76.77 61.45
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15. retro_rnor_2071 82.80 100.00
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16. retro_rnor_2073 82.80 100.00
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17. retro_rnor_2187 54.44 64.66
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18. retro_rnor_2332 67.91 73.09
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19. retro_rnor_2447 61.71 68.67
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20. retro_rnor_2781 61.90 83.94
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21. retro_rnor_2790 61.20 99.60
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Download FASTA sequences of all ENSRNOG00000007663 retrocopies