Parental gene:

Pdzd11, ENSRNOG00000002838

Aliases:Pdzd11, RGD1560007
Description:PDZ domain-containing protein 11 [Source:RefSeq peptide;Acc:NP_001100415]
Organism:Rat (Rattus norvegicus)
Coordinates:X:71330220..71333253(-)


>ENSRNOG00000002838
ATGGACAACCGGATTCCTTATGATGACTACCCAGTGGTTTTCCTGCCTGCCTATGAAAACCCTCCAGCATGGATTCCTCC
TCATGAGAGAGTATACCACCCAGACTACAACAATGAGTTGACCCAGTTTCTGCCCCGAATTGTCACATTGAAGAAGCCTC
CTGGTGCTCAGTTGGGGTTTAACATCCGAGGAGGAAAGGCCTCCCAGCTAGGCATCTTCATCTCCAAGGTGATTCCAGAC
TCGGATGCACATCGAGCAGGACTTCAAGAAGGGGACCAAGTTCTAGCTGTGAATGATGTGGACTTCCAAGATATCGAGCA
CAGCAAAGCTGTGGAAATCCTGAAGACAGCCCGAGAAATCAGCATGCGTGTGCGCTTCTTTCCCTACAATTATCATCGCC
AAAAAGAACGGACTGTGCACTAG

Library Parental gene expression (RPM)
SRP017611_brain 15 .53 RPM
SRP017611_kidney 21 .00 RPM
SRP017611_liver 7 .19 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009203 possible_ortholog 1 retrogene
retro_amel_158,
Bos taurus ENSBTAG00000012860 ortholog_one2one 1 retrogene
retro_btau_594,
Callithrix jacchus ENSCJAG00000012432 ortholog_one2many 1 retrogene
retro_cjac_138,
Cavia porcellus ENSCPOG00000000210 ortholog_one2one 1 retrogene
retro_cpor_143,
Echinops telfairi ENSETEG00000008626 ortholog_one2one 3 retrogenes
retro_etel_1026, retro_etel_1863, retro_etel_921,
Felis catus ENSFCAG00000008633 ortholog_one2one 3 retrogenes
retro_fcat_1356, retro_fcat_1410, retro_fcat_263,
Homo sapiens ENSG00000120509 ortholog_one2one 1 retrogene
retro_hsap_1439,
Gorilla gorilla ENSGGOG00000006626 ortholog_one2one 1 retrogene
retro_ggor_1108,
Macropus eugenii ENSMEUG00000012040 ortholog_one2one 1 retrogene
retro_meug_1858,
Macaca mulatta ENSMMUG00000013938 ortholog_one2one 1 retrogene
retro_mmul_2265,
Nomascus leucogenys ENSNLEG00000000863 ortholog_one2one 1 retrogene
retro_nleu_1414,
Oryctolagus cuniculus ENSOCUG00000017101 ortholog_one2one 2 retrogenes
retro_ocun_1208, retro_ocun_1945,
Ochotona princeps ENSOPRG00000001811 ortholog_one2one 1 retrogene
retro_opri_374,
Pongo abelii ENSPPYG00000020929 ortholog_one2one 1 retrogene
retro_pabe_1193,
Pan troglodytes ENSPTRG00000021995 ortholog_one2one 1 retrogene
retro_ptro_981,
Sarcophilus harrisii ENSSHAG00000005380 ortholog_one2one 1 retrogene
retro_shar_149,
Ictidomys tridecemlineatus ENSSTOG00000027107 ortholog_one2one 2 retrogenes
retro_itri_1264, retro_itri_1702,
Tursiops truncatus ENSTTRG00000007864 ortholog_one2one 1 retrogene
retro_ttru_953,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_615 58.02 57.14
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Download FASTA sequences of all ENSRNOG00000002838 retrocopies