Parental gene:

TUBB2C, ENSPTRG00000023373

Aliases:TUBB2C, TUBB2
Description:Pan troglodytes tubulin, beta 2C (TUBB2C), mRNA. [Source:RefSeq mRNA;Acc:NM_001246378]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:9:136842528..136844977(+)


>ENSPTRG00000023373
ATGAGGGAAATCGTGCACTTGCAGGCCGGGCAGTGCGGCAACCAAATCGGCGCCAAGTTTTGGGAGGTGATCAGCGATGA
GCACGGCATCGACCCCACGGGCACCTACCACGGGGACAGCGACCTGCAGCTGGAACGCATCAACGTGTACTACAATGAGG
CCACCGGCGGCAAGTACGTGCCCCGCGCCGTGCTCGTGGATCTGGAGCCCGGCACCATGGACTCCGTGCGCTCGGGGCCC
TTCGGGCAGATCTTCCGGCCGGACAACTTCGTTTTCGGTCAGAGTGGTGCTGGGAACAACTGGGCCAAGGGGCACTACAC
AGAAGGCGCGGAGCTGGTGGACTCGGTGCTGGATGTTGTGAGAAAGGAGGCTGAGAGCTGTGACTGCCTGCAGGGTTTCC
AGCTGACCCACTCCCTGGGTGGGGGGACTGGGTCTGGGATGGGTACCCTCCTCATCAGCAAGATCCGGGAGGAGTACCCA
GACAGGATCATGAACACGTTTAGTGTGGTGCCTTCGCCCAAAGTGTCAGACACAGTGGTGGAGCCCTACAACGCCACCCT
CTCAGTCCACCAGCTCGTAGAAAACACAGACGAGACCTACTGCATTGATAACGAAGCTCTCTACGACATTTGCTTCAGAA
CCCTAAAGCTGACCACGCCCACCTATGGTGACCTGAACCACCTGGTGTCTGCTACCATGAGTGGGGTCACCACCTGCCTG
CGCTTCCCAGGCCAGCTCAATGCTGACCTGCGGAAGCTGGCTGTGAACATGGTCCCGTTTCCCCGGCTGCACTTCTTCAT
GCCCGGCTTTGCCCCACTGACCAGCCGGGGCAGCCAGCAGTACCGGGCGCTGACCGTGCCCGAGCTCACCCAGCAGATGT
TTGATGCCAAGAACATGATGGCTGCCTGCGACCCCCGCCATGGCCGCTACCTGACGGTTGCCGCCGTGTTCAGGGGCCGC
ATGTCCATGAAGGAGGTGGACGAGCAAATGCTTAATGTTCAAAACAAAAACAGCAGCTATTTTGTTGAGTGGATCCCCAA
CAATGTGAAAACGGCTGTCTGTGACATCCCACCTCGGGGGCTAAAAATGTCCGCCACCTTCATCGGCAACAGCACGGCCA
TCCAGGAGCTGTTCAAGCGCATCTCCGAGCAGTTCACGGCCATGTTCCGGCGCAAGGCCTTCCTGCACTGGTACACGGGC
GAGGGCATGGACGAGATGGAGTTCACCGAGGCCGAGAGCAACATGAATGACCTGGTGTCCGAGTACCAGCAGTACCAGGA
TGCCACAGCCGAGGAGGAGGGCGAGTTTGAGGAGGAGGCTGAGGAGGAGGTGGCCTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 194 .76 RPM
SRP007412_cerebellum 51 .94 RPM
SRP007412_heart 81 .03 RPM
SRP007412_kidney 104 .97 RPM
SRP007412_liver 106 .98 RPM
SRP007412_testis 561 .17 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000011966 ortholog_one2one 1 retrogene
retro_cpor_497,
Microcebus murinus ENSMICG00000010939 ortholog_one2one 1 retrogene
retro_mmur_792,
Macaca mulatta ENSMMUG00000012164 ortholog_one2one 2 retrogenes
retro_mmul_1849, retro_mmul_2533,
Monodelphis domestica ENSMODG00000017213 ortholog_one2one 1 retrogene
retro_mdom_117,
Mus musculus ENSMUSG00000036752 ortholog_one2one 2 retrogenes
retro_mmus_158, retro_mmus_422,
Otolemur garnettii ENSOGAG00000005927 ortholog_one2one 2 retrogenes
retro_ogar_3410, retro_ogar_3450,
Pan troglodytes ENSPTRG00000008496 within_species_paralog 1 retrogene
retro_ptro_2369,
Pan troglodytes ENSPTRG00000017939 within_species_paralog 3 retrogenes
retro_ptro_151, retro_ptro_2527, retro_ptro_2677,
Rattus norvegicus ENSRNOG00000010170 ortholog_one2one 2 retrogenes
retro_rnor_742, retro_rnor_867,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_2403 70.76 100.00
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2. retro_ptro_3166 85.27 100.00
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Download FASTA sequences of all ENSPTRG00000023373 retrocopies