Parental gene:

ASS1, ENSPTRG00000021473

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:9:129768496..129824968(+)


>ENSPTRG00000021473
ATGTCCAGCAAAGGCTCCGTGGTTCTGGCCTACAGTGGCGGCCTGGACACCTCGTGCATCCTCGTGTGGCTGAAGGAACA
AGGCTATGACGTCATTGCCTATCTGGCCAACATTGGCCAGAAGGAAGACTTCGAGGAAGCCAGGAAGAAGGCACTGAAGC
TTGGGGCCAAAAAGGTGTTCATTGAGGATGTCAGCAAGGAGTTTGTGGAGGAGTTCATCTGGCCGGCCATCCAGTCCAGC
GCACTGTATGAGGACCGCTACCTCCTGGGCACCTCTCTTGCCAGGCCCTGCATCGCCCGCAAACAAGTGGAAATCGCCCA
GCGGGAGGGGGCCAAGTATGTGTCCCACGGCGCCACAGGAAAGGGGAACGATCAGGTCCGGTTTGAGCTCAGCTGCTACT
CGCTGGCCCCCCACATAAAGGTCATTGCTCCCTGGAGGATGCCCGAATTCTACAACCGGTTCAAGGGCCGCAATGACCTA
ATGGAGTACGCAAAGCAACACGGGATTCCCATCCCAGTCACTCCCAAGAACCCGTGGAGCATGGATGAGAACCTCATGCA
CATCAGCTACGAGGCTGGAATCCTGGAGAACCCCAAGAACCAAGCGCCTCCAGGTCTCTACACGAAGACCCAGGACCCAG
CCAAAGCCCCCAACACCCCTGACATTCTCGAGATCGAGTTCAAAAAAGGGGTCCCTGTGAAGGTGACCAACGTCAAGGAT
GGCACCACCCACCAGACCTCCTTGGAGCTCTTCATGTACCTGAACGAAGTCGCGGGCAAGCATGGCGTGGGCCGTATTGA
CATCGTGGAGAACCGCTTCATTGGAATGAAGTCCCGAGGTATCTACGAGACCCCAGCAGGCACCATCCTTTACCATGCTC
ATTTAGACATCGAGGCCTTCACCATGGACCGGGAAGTGCGCAAAATCAAACAAGGCCTGGGCTTGAAATTTGCTGAGCTG
GTGTATACCGGTTTCTGGCACAGCCCTGAGTGTGAATTTGTCCGCCACTGCATCGCCAAGTCCCAGGAGCGAGTGGAAGG
GAAAGTGCAGGTGTCCGTCCTCAAGGGCCAGGTGTACATCCTCGGCCGGGAGTCCCCACTGTCTCTCTACAATGAGGAGC
TGGTGAGCATGAACGTGCAGGGTGATTATGAGCCAACTGATGCCACCGGGTTCATCAACATCAATTCCCTCAGGCTGAAG
GAATATCATCGTCTCCAGAGCAAGGTCACTGCCAAATAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 42 .11 RPM
SRP007412_cerebellum 48 .83 RPM
SRP007412_heart 16 .26 RPM
SRP007412_kidney 1168 .07 RPM
SRP007412_liver 933 .12 RPM
SRP007412_testis 18 .44 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000020554 possible_ortholog 3 retrogenes
retro_cjac_1219, retro_cjac_4038, retro_cjac_4209,
Homo sapiens ENSG00000130707 ortholog_one2one 14 retrogenes
retro_hsap_2247, retro_hsap_2885, retro_hsap_3109, retro_hsap_3175, retro_hsap_3252, retro_hsap_3564, retro_hsap_3824, retro_hsap_4149, retro_hsap_4182, retro_hsap_4648, retro_hsap_4743, retro_hsap_4934, retro_hsap_820, retro_hsap_985,
Gorilla gorilla ENSGGOG00000010228 ortholog_one2one 8 retrogenes
retro_ggor_1346, retro_ggor_1675, retro_ggor_2134, retro_ggor_2403, retro_ggor_2574, retro_ggor_2787, retro_ggor_671, retro_ggor_787,
Myotis lucifugus ENSMLUG00000006066 ortholog_one2one 2 retrogenes
retro_mluc_1058, retro_mluc_1304,
Mus musculus ENSMUSG00000076441 ortholog_one2many 1 retrogene
retro_mmus_135,
Nomascus leucogenys ENSNLEG00000012500 ortholog_one2one 13 retrogenes
retro_nleu_1088, retro_nleu_1245, retro_nleu_1317, retro_nleu_1381, retro_nleu_1390, retro_nleu_1424, retro_nleu_1701, retro_nleu_1792, retro_nleu_220, retro_nleu_253, retro_nleu_2680, retro_nleu_2764, retro_nleu_625,
Pongo abelii ENSPPYG00000019692 ortholog_one2one 13 retrogenes
retro_pabe_1963, retro_pabe_2390, retro_pabe_2637, retro_pabe_2696, retro_pabe_2937, retro_pabe_3069, retro_pabe_3197, retro_pabe_3422, retro_pabe_3460, retro_pabe_3521, retro_pabe_3522, retro_pabe_731, retro_pabe_834,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_571 85.11 79.61
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2. retro_ptro_762 86.47 100.00
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3. retro_ptro_1590 77.60 74.51
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4. retro_ptro_1951 83.61 88.11
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5. retro_ptro_2101 82.11 52.67
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6. retro_ptro_2199 82.72 65.53
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7. retro_ptro_2268 86.29 77.67
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8. retro_ptro_2421 87.39 84.47
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9. retro_ptro_2602 86.55 69.90
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10. retro_ptro_2821 87.20 100.00
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11. retro_ptro_2836 80.16 60.19
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12. retro_ptro_3064 83.13 100.00
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13. retro_ptro_3158 85.96 100.00
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14. retro_ptro_3298 74.70 100.00
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Download FASTA sequences of all ENSPTRG00000021473 retrocopies