Parental gene:

ISCA1, ENSPTRG00000021075

Aliases:None
Description:Pan troglodytes iron-sulfur cluster assembly 1 homolog (S. cerevisiae) (ISCA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001242612]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:9:85087337..85105761(-)


>ENSPTRG00000021075
ATGGTGGCGGCGGGGGGCGGGGCTAGGACTGAGGGCGCCGTGCGCCGAAGCTTGTGGCGTCAATGCGCCCGCCGTGTCCA
TGGAGAGAAGCTGAGGCGGCAGACCTTCGGCCCGAGGCACCGGGGCGCCGGGACGGCGAAGATGTCGGCTTCCTTAGTCC
GGGCAACTGTCCGGGCTGTGAGCAAGAGGAAGCTGCAGCCCACCCGGGCAGCCCTCACCCTGACACCTTCAGCAGTAAAC
AAGATAAAACAACTTCTTAAAGATAAGCCTGAGCATGTAGGTGTAAAAGTTGGTGTCCGAACCAGGGGCTGTAATGGCCT
TTCTTATACTCTAGAATATACAAAGACAAAAGGAGATTCTGATGAAGAAGTTATTCAAGATGGAGTCAGAGTATTCATCG
AAAAGAAAGCACAGCTAACACTTTTAGGAACAGAAATGGACTATGTTGAAGACAAATTATCCAGTGAGTTTGTGTTCAAT
AACCCAAACATCAAAGGGACTTGTGGCTGTGGAGAAAGCTTTAATATTTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 38 .84 RPM
SRP007412_cerebellum 15 .67 RPM
SRP007412_heart 11 .86 RPM
SRP007412_kidney 15 .38 RPM
SRP007412_liver 5 .04 RPM
SRP007412_testis 8 .54 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000046526 possible_ortholog 2 retrogenes
retro_btau_1787, retro_btau_506,
Callithrix jacchus ENSCJAG00000001940 ortholog_one2one 6 retrogenes
retro_cjac_1623, retro_cjac_1734, retro_cjac_1870, retro_cjac_2608, retro_cjac_350, retro_cjac_672,
Dasypus novemcinctus ENSDNOG00000010652 possible_ortholog 5 retrogenes
retro_dnov_1162, retro_dnov_142, retro_dnov_1956, retro_dnov_431, retro_dnov_95,
Echinops telfairi ENSETEG00000016537 possible_ortholog 1 retrogene
retro_etel_1857,
Homo sapiens ENSG00000135070 ortholog_one2one 6 retrogenes
retro_hsap_1556, retro_hsap_1768, retro_hsap_1975, retro_hsap_2314, retro_hsap_317, retro_hsap_3329,
Gorilla gorilla ENSGGOG00000007518 ortholog_one2many 2 retrogenes
retro_ggor_1182, retro_ggor_92,
Macaca mulatta ENSMMUG00000003399 ortholog_one2one 3 retrogenes
retro_mmul_1230, retro_mmul_1365, retro_mmul_2211,
Monodelphis domestica ENSMODG00000003559 ortholog_one2one 1 retrogene
retro_mdom_583,
Mus musculus ENSMUSG00000044792 ortholog_one2many 1 retrogene
retro_mmus_278,
Pongo abelii ENSPPYG00000019339 ortholog_one2one 5 retrogenes
retro_pabe_1287, retro_pabe_2043, retro_pabe_2744, retro_pabe_2745, retro_pabe_367,
Rattus norvegicus ENSRNOG00000018343 ortholog_one2one 4 retrogenes
retro_rnor_1177, retro_rnor_1805, retro_rnor_2254, retro_rnor_2956,
Tarsius syrichta ENSTSYG00000012826 possible_ortholog 2 retrogenes
retro_tsyr_1060, retro_tsyr_1698,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_256 91.96 63.64
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2. retro_ptro_1047 71.94 77.84
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3. retro_ptro_1185 81.29 85.80
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4. retro_ptro_1316 85.71 86.93
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5. retro_ptro_1689 94.19 88.07
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6. retro_ptro_2149 92.45 90.34
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7. retro_ptro_2842 100.00 59.09
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Download FASTA sequences of all ENSPTRG00000021075 retrocopies