Parental gene:

GTF3C6, ENSPTRG00000018502

Aliases:None
Description:General transcription factor IIIC, polypeptide 6, alpha 35kDa [Source:UniProtKB/TrEMBL;Acc:K7B6B2]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:6:112036637..112045922(+)


>ENSPTRG00000018502
ATGGCGGCGGCGGCGGACGAGCGGAGTCCAGAGGACGGAGAAGACGAGGAAGAGGAGGAGCAGTTGGTTCTGGTGGAATT
ATCAGGAATTATTGATTCAGACTTCCTCTCAAAATGTGAAAATAAATGCAAGGTTTTGGGCATTGACACTGAGAGGCCCA
TTCTGCAAGTGGACAGCTGTGTCTTTGCTGGGGAGTATGAAGACACTCTTGGGACCTGTGTTATATTTGAAGAAAATGTT
GAACATGCTGATACAGAAGGCAATAATAAAACAGTGCTAAAATATAAATGCCATACAATGAAGAAGCTCAGCATGACAAG
AACTCTCCTGACAGAGAAGAAGGAAGGAGAAGAAAACATAGGTGGGGTGGAATGGCTGCAAATAAAGGATAATGATTTCT
CCTATCGACCCAACATGATTTGTAACTTTCTACATGAAAATGAAGACGAAGAAGTGGTAGCTTCAGCCCCAGATAAATCT
TTGGAATTGGAAGAGGAAGAGATTCAAATGAACGACAGTTCAAACCTGAGTTGTGAACAGGAGAAACCAATGCACTTGGA
AATAGAAGATTCTGGTCCTCTTATTGATATACCTTCTGAGACAGAAGGTTCTGTTTTTATGACTCAAATGCTGCCTTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 12 .96 RPM
SRP007412_cerebellum 14 .55 RPM
SRP007412_heart 40 .43 RPM
SRP007412_kidney 35 .49 RPM
SRP007412_liver 22 .85 RPM
SRP007412_testis 44 .89 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000003535 ortholog_one2one 1 retrogene
retro_amel_370,
Callithrix jacchus ENSCJAG00000005248 ortholog_one2one 2 retrogenes
retro_cjac_3118, retro_cjac_4098,
Dasypus novemcinctus ENSDNOG00000014270 ortholog_one2one 4 retrogenes
retro_dnov_1228, retro_dnov_1654, retro_dnov_377, retro_dnov_931,
Homo sapiens ENSG00000155115 ortholog_one2one 3 retrogenes
retro_hsap_3714, retro_hsap_4728, retro_hsap_4735,
Gorilla gorilla ENSGGOG00000010681 ortholog_one2one 1 retrogene
retro_ggor_2511,
Myotis lucifugus ENSMLUG00000013919 ortholog_one2one 1 retrogene
retro_mluc_897,
Macaca mulatta ENSMMUG00000012709 ortholog_one2one 3 retrogenes
retro_mmul_1700, retro_mmul_2520, retro_mmul_2524,
Monodelphis domestica ENSMODG00000017924 ortholog_one2one 1 retrogene
retro_mdom_876,
Mustela putorius furo ENSMPUG00000010179 ortholog_one2many 1 retrogene
retro_mputfur_182,
Nomascus leucogenys ENSNLEG00000012846 ortholog_one2one 3 retrogenes
retro_nleu_1237, retro_nleu_2122, retro_nleu_2552,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_2516 70.73 76.42
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2. retro_ptro_3145 69.14 75.00
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3. retro_ptro_3149 91.46 93.40
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Download FASTA sequences of all ENSPTRG00000018502 retrocopies