Parental gene:

GTF3C6, ENSMMUG00000012709

Aliases:None
Description:general transcription factor IIIC, polypeptide 6, alpha 35kDa [Source:HGNC Symbol;Acc:20872]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:4:152957858..152968154(-)


>ENSMMUG00000012709
ATGGCGGCGGCCGACGAGCGGGGTATGGAAGACGGAGAAGAGGAGGAAGAGGAGGAGCAGTTGGTTCTGGTGGAATTATC
AGGAATTATTGATTCAGACTTTCTCTCAAAATGTCAAAATAAATGCAAGGTTTTGGGCATTGACACTGAGAGGCCCATTC
TGCAAGTGGACAGCTGTGTCTTTGCTGGGGAGTATGAAGACACTCTTGGGACCTGTGTTATATTTGAAGAAAATGTTGAA
CATGCTGATACAGAAGGCAATAATAAAACAGTGCTAAAATATAAATGTCATACAATGAAGAAGCTCAGCATGACAAGAAC
TCTTCTGACAGAGAAGAAGGAAGGAGAAGAAAACATAGGTGGAGTGGAATGGCTGCAAATAAAGGATAATGATTTCTCCT
ATCGACCCAACATGATTTGTAGCTTTCTACATGAAAATGAAGACGAAGAAGTGGCAGCCTCAGCCCCAGATAAATCTTTG
GAATTGGAAGAGGAAGAGATTCAAATGAACGACAGTTCAAACCTGAGTTGTGAACAGGAGAAACCAATGCACTTGGATAT
AGAAGATTCTGGTCCTCTTATTGATATACCTTCTGAGACAGAAGGTTCTGTTTTTATGGAAACTCAAATGCTGCCTTAG

Library Parental gene expression (RPM)
SRP007412_brain 11 .54 RPM
SRP007412_brain_prefrontal_cortex 9 .52 RPM
SRP007412_cerebellum 8 .85 RPM
SRP007412_heart 19 .67 RPM
SRP007412_kidney 45 .42 RPM
SRP007412_liver 7 .24 RPM
SRP007412_testis 45 .65 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000003535 ortholog_one2one 1 retrogene
retro_amel_370,
Callithrix jacchus ENSCJAG00000005248 ortholog_one2one 2 retrogenes
retro_cjac_3118, retro_cjac_4098,
Dasypus novemcinctus ENSDNOG00000014270 ortholog_one2one 4 retrogenes
retro_dnov_1228, retro_dnov_1654, retro_dnov_377, retro_dnov_931,
Homo sapiens ENSG00000155115 ortholog_one2one 3 retrogenes
retro_hsap_3714, retro_hsap_4728, retro_hsap_4735,
Gorilla gorilla ENSGGOG00000010681 ortholog_one2one 1 retrogene
retro_ggor_2511,
Myotis lucifugus ENSMLUG00000013919 ortholog_one2one 1 retrogene
retro_mluc_897,
Monodelphis domestica ENSMODG00000017924 ortholog_one2one 1 retrogene
retro_mdom_876,
Mustela putorius furo ENSMPUG00000010179 ortholog_one2many 1 retrogene
retro_mputfur_182,
Nomascus leucogenys ENSNLEG00000012846 ortholog_one2one 3 retrogenes
retro_nleu_1237, retro_nleu_2122, retro_nleu_2552,
Pan troglodytes ENSPTRG00000018502 ortholog_one2one 3 retrogenes
retro_ptro_2516, retro_ptro_3145, retro_ptro_3149,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_1700 70.91 76.89
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2. retro_mmul_2520 65.20 93.87
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3. retro_mmul_2524 92.37 55.19
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Download FASTA sequences of all ENSMMUG00000012709 retrocopies