Parental gene:

MRPS18B, ENSPTRG00000017932

Aliases:None
Description:Pan troglodytes mitochondrial ribosomal protein S18B (MRPS18B), nuclear gene encoding mitochondrial protein, mRNA. [Source:RefSeq mRNA;Acc:NM_001040115]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:6:30963101..30971786(+)


>ENSPTRG00000017932
ATGGCGGCGTCTGTATTAAACACCGTGCTGAGGCGGCTTCCTATGCTATCTCTCTTCCGAGGTTCTCACAGAGTTCAGGT
TCCCCTCCAGACTCTTTGCACCAAAGCTCCCTCTGAGGAAGATTCTTTGTCCTCAGTTCCCATTTCTCCTTATAAGGATG
AGCCCTGGAAATATCTGGAATCAGAAGAATACCAGGAGCGATATGGTTCTCGCCCCGTCTGGGCTGACTACCGCCGCAAC
CACAAGGGTGGTGTACCCCCACAGCGGACTCGGAAGACATGTATTCGTCGGAATAAAGTTGTTGGGAATCCCTGCCCCAT
CTGTCGAGATCACAAGTTGCATGTTGACTTTAGGAACGTGAAGCTCTTGGAGCAATTTGTCTGCGCCCACACGGGTATCA
TCTTCCATGCTCCATACACAGGAGTCTGTGTGAAGCAGCACAAGCGGTTGACCCAGGCCATCCAGAAAGCCAGGGATCAT
GGTCTCCTCATTTACCACATCCCCCAGGTTGAACCACGGGACCTTGACTTCAGTACCTCTCATGGGGCTGTGAGTGCTAC
TCCGCCAGCCCCCACCCTGGTCTCAGGTGACCCCTGGTACCCATGGTACAACTGGAAACAGCCACCGGAGAGAGAACTGT
CTCGCCTTCGCCGGCTTTACCAGGGTCATCTCCGAGAAGAGAGTGGCCCCCCACCTGAGTCAATGCCCAAGATGCCCCCT
AGAACACCAGCGGAAGCCTCCTCCACTGGGCAGACAGGCCCTCAGAGTGCTCTGTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 20 .34 RPM
SRP007412_cerebellum 20 .94 RPM
SRP007412_heart 35 .44 RPM
SRP007412_kidney 43 .28 RPM
SRP007412_liver 43 .83 RPM
SRP007412_testis 16 .76 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000005581 ortholog_one2one 1 retrogene
retro_chof_505,
Macropus eugenii ENSMEUG00000012457 ortholog_one2one 10 retrogenes
retro_meug_1183, retro_meug_2004, retro_meug_2124, retro_meug_215, retro_meug_610, retro_meug_648, retro_meug_696, retro_meug_712, retro_meug_717, retro_meug_734,
Macaca mulatta ENSMMUG00000006525 ortholog_one2one 1 retrogene
retro_mmul_900,
Monodelphis domestica ENSMODG00000015933 ortholog_one2one 1 retrogene
retro_mdom_426,
Mus musculus ENSMUSG00000024436 ortholog_one2one 1 retrogene
retro_mmus_2036,
Nomascus leucogenys ENSNLEG00000005224 ortholog_one2one 1 retrogene
retro_nleu_1811,
Oryctolagus cuniculus ENSOCUG00000002149 ortholog_one2one 2 retrogenes
retro_ocun_1307, retro_ocun_1641,
Pongo abelii ENSPPYG00000016412 ortholog_one2one 1 retrogene
retro_pabe_2050,
Rattus norvegicus ENSRNOG00000000804 ortholog_one2one 1 retrogene
retro_rnor_1328,
Ictidomys tridecemlineatus ENSSTOG00000011853 ortholog_one2one 1 retrogene
retro_itri_254,
Tarsius syrichta ENSTSYG00000003333 ortholog_one2one 1 retrogene
retro_tsyr_1769,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_1648 73.56 100.00
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Download FASTA sequences of all ENSPTRG00000017932 retrocopies