Parental gene: | CMC1, ENSPTRG00000014706 |
| Aliases: | None |
| Description: | None |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 3:28678530..28757228(+) |
>ENSPTRG00000014706
ATGGCGCTCGACCCCGCAGACCAGCATCTCAGACATGTCGAAAAAGATGTTTTGATCCCTAAAATAATGAGAGAAAAGGC
CAGAGAGAGGTGTTCTGAACAAGTTCAAGATTTTACCAAATGTTGCAAGAACTCTGGAGTTCTTATGGTAGTAAAATGCC
GGAAAGAAAATTCTGCATTGAAAGAATGTCTAACTGCTTACTATAATGATCCAGCCTTTTATGAAGAATGCAAAATGGAA
TACCTGAAGGAAAGGGAAGAATTCAGAAAAACTGGAATTCCTACAAAGAAAAGGCTACAGAAGCTTCCAACAAGCATGTA
G
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 2 .95 RPM |
| SRP007412_cerebellum | 1 .72 RPM |
| SRP007412_heart | 7 .32 RPM |
| SRP007412_kidney | 6 .80 RPM |
| SRP007412_liver | 6 .45 RPM |
| SRP007412_testis | 9 .17 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000004272 | ortholog_one2one | 2 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000018923 | ortholog_one2one | 2 retrogenes | |
| Homo sapiens | ENSG00000187118 | ortholog_one2one | 4 retrogenes | |
| Gorilla gorilla | ENSGGOG00000012406 | ortholog_one2one | 4 retrogenes | |
| Microcebus murinus | ENSMICG00000011702 | ortholog_one2one | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000000044 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000004066 | ortholog_one2one | 4 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000012793 | ortholog_one2one | 2 retrogenes | |
| Ochotona princeps | ENSOPRG00000009474 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000014054 | ortholog_one2one | 4 retrogenes | |
| Rattus norvegicus | ENSRNOG00000010149 | ortholog_one2one | 1 retrogene | |
| Sorex araneus | ENSSARG00000001629 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000002573 | ortholog_one2one | 4 retrogenes | |
| Tarsius syrichta | ENSTSYG00000011371 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_763 | 67.39 | 86.79 | Please wait, loading  |
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| 2. | retro_ptro_942 | 84.85 | 91.51 | Please wait, loading |
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| 3. | retro_ptro_1207 | 88.31 | 72.64 | Please wait, loading |
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| 4. | retro_ptro_2181 | 76.24 | 93.40 | Please wait, loading |
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Download FASTA sequences of all ENSPTRG00000014706 retrocopies