Parental gene:

EWSR1, ENSPTRG00000014218

Aliases:None
Description:Ewing sarcoma breakpoint region 1 [Source:UniProtKB/TrEMBL;Acc:K7AX24]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:22:27967012..28000436(+)


>ENSPTRG00000014218
ATGGCGTCCACGGATTACAGTACCTATAGCCAAGCTGCAGCGCAGCAGGGCTACAGTGCTTACACCGCCCAGCCCACTCA
AGGATATGCACAGACCACCCAGGCATATGGGCAACAAAGCTATGGAACCTATGGACAGCCCACTGATGTCAGCTATACCC
AGGCTCAGACCACTGCAACCTATGGGCAGACCGCCTATGCAACTTCTTATGGACAGCCTCCCACTGGTTATACTACTCCA
ACTGCCCCCCAGGCATACAGCCAGCCTGTCCAGGGGTATGGCACTGGTGCTTATGATACCACCACTGCTACAGTCACCAC
CACCCAGGCCTCCTATGCAGCTCAGTCTGCATATGGCACTCAGCCTGCTTATCCAGCCTATGGGCAGCAGCCAGCAGCCA
CTGCACCTACAAGACCGCAGGATGGAAACAAGCCCACTGAGACTAGTCAACCTCAATCTAGCACAGGGGGTTACAACCAG
CCCAGCCTAGGATATGGACAGAGTAACTACAGTTATCCCCAGGTACCTGGGAGCTACCCCATGCAGCCAGTCACCGCACC
TCCATCCTACCCTCCTACCAGCTATTCCTCTACACAGCCGACTAGTTATGATCAGAGCAGTTACTCTCAGCAGAACACCT
ATGGGCAGCCGAGCAGCTATGGACAGCAGAGTAGCTATGGTCAACAAAGCAGCTATGGGCAGCAGCCTCCCACTAGTTAC
CCACCCCAAACTGGATCCTACAGCCAAGCTCCAAGTCAATATAGCCAACAGAGCAGCAGCTACGGGCAGCAGAGTTCATT
CCGACAGGACCACCCCAGTAGCATGGGTGTTTATGGGCAGGAGTCTGGAGGATTTTCCGGACCAGGAGAGAACCGGAGCA
TGAGTGGCCCTGATAACCGGGGCAGGGGAAGAGGGGGATTTGATCGTGGAGGCATGAGCAGAGGTGGGCGGGGAGGAGGA
CGCGGTGGAATGGGCAGCGCTGGAGAGCGAGGTGGCTTCAATAAGCCTGGTGGACCCATGGATGAAGGACCAGATCTTGA
TCTAGGCCCACCTGTAGATCCAGATGAAGATTCTGACAACAGTGCAATTTATGTACAAGGATTAAATGACAGTGTGACTC
TAGATGATCTGGCAGACTTCTTTAAGCAGTGTGGGGTTGTTAAGATGAACAAGAGAACTGGGCAACCCATGATCCACATC
TACCTGGACAAGGAAACAGGAAAGCCCAAAGGCGATGCTACAGTGTCCTATGAAGACCCACCCACTGCCAAGGCTGCCGT
GGAATGGTTTGATGGGAAAGATTTTCAAGGGAGCAAACTTAAAGTCTCCCTTGCTCGGAAGAAGCCTCCAATGAACAGTA
TGCGGGGTGGTATGCCACCCCGTGAGGGCAGAGGGATGCCACCACCACTCCGCGGAGGTCCAGGAGGCCCAGGAGGTCCT
GGGGGACCCATGGGTCGCATGGGAGGCCGTGGAGGAGATAGAGGAGGCTTCCCTCCAAGAGGACCCCGGGGTTCCCGAGG
GAACCCCTCTGGAGGAGGAAACGTCCAGCACCGAGCTGGAGACTGGCAGTGTCCCAATCCGGGTTGTGGAAACCAGAACT
TCGCCTGGAGAACAGAGTGCAACCAGTGTAAGGCCCCAAAGCCTGAAGGCTTCCTCCCGCCACCCTTCCCGCCCCCGGGT
GGTGATCGTGGCAGAGGTGGCCCTGGTGGCATGCGGGGAGGAAGAGGTGGCCTCATGGATCGTGGTGGTCCCGGTGGAAT
GTTCAGAGGTGGCCGTGGTGGAGACAGAGGTGGCTTCCGTGGTGGCCGGGGCATGGACCGAGGTGGCTTTGGTGGAGGAA
GACGAGGTGGCCCTGGGGGGCCCCCTGGACCTTTGATGGAACAGATGGGAGGAAGAAGAGGAGGACGTGGAGGACCTGGA
AAAATGGATAAAGGCGAGCACCGTCAGGAGCGCAGAGATCGGCCCTACTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 124 .87 RPM
SRP007412_cerebellum 219 .75 RPM
SRP007412_heart 90 .91 RPM
SRP007412_kidney 155 .81 RPM
SRP007412_liver 189 .30 RPM
SRP007412_testis 438 .29 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000008298 ortholog_one2one 2 retrogenes
retro_amel_191, retro_amel_959,
Canis familiaris ENSCAFG00000012160 possible_ortholog 8 retrogenes
retro_cfam_1142, retro_cfam_1183, retro_cfam_1225, retro_cfam_133, retro_cfam_1397, retro_cfam_1736, retro_cfam_1889, retro_cfam_560,
Callithrix jacchus ENSCJAG00000019987 possible_ortholog 4 retrogenes
retro_cjac_1716, retro_cjac_2022, retro_cjac_2813, retro_cjac_2911,
Homo sapiens ENSG00000182944 ortholog_one2one 1 retrogene
retro_hsap_463,
Gorilla gorilla ENSGGOG00000012212 ortholog_one2one 1 retrogene
retro_ggor_444,
Macropus eugenii ENSMEUG00000008703 possible_ortholog 1 retrogene
retro_meug_1424,
Myotis lucifugus ENSMLUG00000012058 possible_ortholog 1 retrogene
retro_mluc_328,
Monodelphis domestica ENSMODG00000008679 possible_ortholog 1 retrogene
retro_mdom_279,
Oryctolagus cuniculus ENSOCUG00000004432 possible_ortholog 2 retrogenes
retro_ocun_1346, retro_ocun_242,
Pongo abelii ENSPPYG00000011684 ortholog_one2one 1 retrogene
retro_pabe_1769,
Ictidomys tridecemlineatus ENSSTOG00000023177 ortholog_one2one 1 retrogene
retro_itri_1892,
Tursiops truncatus ENSTTRG00000011881 ortholog_one2one 1 retrogene
retro_ttru_1366,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_350 90.52 60.82
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Download FASTA sequences of all ENSPTRG00000014218 retrocopies