Parental gene:

ACTR3, ENSPTRG00000012388

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:2B:114363559..114437239(+)


>ENSPTRG00000012388
ATGGCGGGACGGCTGCCGGCCTGTGTGGTGGACTGTGGCACGGGGTATACAAAACTAGGATATGCTGGAAATACAGAACC
ACAGTTTATCATCCCTTCCTGTATTGCTATTAAGGAGTCAGCAAAAGTGGGTGATCAAGCTCAAAGGAGGGTGATGAAGG
GTGTTGATGACCTAGACTTCTTCATTGGTGATGAAGCAATAGAAAAACCTACATATGCAACAAAGTGGCCAATCCGCCAT
GGTATAGTTGAAGATTGGGACTTAATGGAAAGGTTTATGGAGCAAGTGATCTTTAAATATTTAAGGGCAGAACCTGAAGA
CCATTATTTTCTTTTGACTGAACCTCCATTGAATACTCCAGAAAACAGGGAATATACTGCTGAGATAATGTTTGAGTCCT
TCAATGTTCCAGGCTTGTACATTGCTGTGCAGGCTGTTCTTGCCTTAGCTGCATCTTGGACCTCAAGACAAGTAGGAGAA
CGGACGTTGACCGGTACGGTAATAGACAGTGGAGATGGTGTCACTCATGTCATTCCTGTGGCTGAAGGGTATGTGATTGG
CAGCTGTATTAAACACATTCCAATCGCAGGACGAGATATAACATATTTTATTCAGCAACTGCTGAGAGACCGAGAAGTAG
GAATCCCTCCAGAACAATCCTTGGAAACTGCTAAGGCAGTAAAGGAGCGCTATAGTTATGTCTGCCCAGATTTAGTAAAA
GAATTTAACAAGTATGATACAGATGGGTCAAAATGGATTAAACAGTATACTGGAATCAATGCTATCTCAAAGAAAGAATT
TTCTATCGATGTTGGTTATGAAAGATTTTTGGGACCTGAAATCTTTTTTCATCCAGAGTTTGCTAATCCAGACTTTACAC
AACCTATCTCAGAAGTTGTAGATGAAGTAATTCAGAATTGTCCTATTGATGTCAGACGTCCTCTCTACAAGAATATTGTC
CTCTCTGGAGGTTCAACCATGTTCAGGGACTTTGGACGTCGCTTGCAAAGAGATTTGAAAAGAACTGTAGATGCCCGGCT
GAAATTAAGTGAGGAATTGAGTGGTGGTAGATTGAAGCCAAAACCTATTGATGTACAAGTCATTACACACCACATGCAGC
GATATGCAGTTTGGTTTGGAGGATCAATGCTGGCTTCCACGCCTGAGTTCTACCAAGTATGCCACACCAAAAAGGATTAT
GAAGAAATTGGACCTAGCATTTGTCGTCACAATCCAGTGTTTGGAGTCATGTCGTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 55 .07 RPM
SRP007412_cerebellum 70 .91 RPM
SRP007412_heart 64 .12 RPM
SRP007412_kidney 65 .93 RPM
SRP007412_liver 54 .54 RPM
SRP007412_testis 165 .35 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000003401 ortholog_one2one 1 retrogene
retro_btau_672,
Callithrix jacchus ENSCJAG00000014091 ortholog_one2one 4 retrogenes
retro_cjac_3602, retro_cjac_3813, retro_cjac_385, retro_cjac_4005,
Homo sapiens ENSG00000115091 ortholog_one2one 2 retrogenes
retro_hsap_1391, retro_hsap_4694,
Gorilla gorilla ENSGGOG00000011346 ortholog_one2one 1 retrogene
retro_ggor_2921,
Mustela putorius furo ENSMPUG00000010717 ortholog_one2one 1 retrogene
retro_mputfur_1275,
Mus musculus ENSMUSG00000026341 ortholog_one2one 1 retrogene
retro_mmus_3653,
Nomascus leucogenys ENSNLEG00000011619 ortholog_one2one 2 retrogenes
retro_nleu_1077, retro_nleu_2364,
Pongo abelii ENSPPYG00000012798 ortholog_one2one 1 retrogene
retro_pabe_3647,
Pan troglodytes ENSPTRG00000019897 within_species_paralog 8 retrogenes
retro_ptro_1137, retro_ptro_1479, retro_ptro_2007, retro_ptro_2952, retro_ptro_2961, retro_ptro_3052, retro_ptro_3281, retro_ptro_420,
Vicugna pacos ENSVPAG00000009479 ortholog_one2one 1 retrogene
retro_vpac_468,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_955 73.80 64.35
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2. retro_ptro_3118 81.90 82.06
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Download FASTA sequences of all ENSPTRG00000012388 retrocopies