Parental gene:

PKM, ENSPTRG00000007246

Aliases:None
Description:pyruvate kinase, muscle [Source:HGNC Symbol;Acc:9021]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:15:69771161..69803936(-)


>ENSPTRG00000007246
ATGTCAAAGCCCCATAGTGAAGCCGGGACTGCCTTCATTCAGACCCAGCAGCTGCATGCAGCCATGGCTGACACATTCCT
GGAGCACATGTGCCGCCTGGACATTGATTCACCACCCATCACAGCCCGGAACACTGGCATCATCTGTACCATTGGCCCAG
CTTCCCGATCAGTGGAGACGTTGAAGGAGATGATTAAGTCTGGAATGAATGTGGCTCGTCTGAACTTCTCTCATGGAACT
CATGAGTACCATGCAGAGACCATCAAGAATGTGCGCACAGCCACGGAAAGCTTTGCTTCTGACCCCATCCTCTACCGGCC
CGTTGCTGTGGCTCTAGACACTAAAGGACCTGAGATCCGAACTGGGCTCATCAAGGGCAGCGGCACTGCAGAGGTGGAGC
TGAAGAAGGGAGCCACTCTCAAAATCACGCTGGATAACGCCTACATGGAAAAGTGTGACGAGAACATCCTGTGGCTGGAC
TACAAGAACATCTGCAAGGTGGTGGAAGTGGGCAGCAAGATCTACGTGGATGATGGGCTTATTTCTCTCCAGGTGAAGCA
GAAAGGTGCCGACTTCCTGGTGACGGAGGTGGAAAATGGTGGCTCCTTGGGCAGCAAGAAGGGTGTGAACCTTCCTGGGG
CTGCTGTGGACTTGCCTGCTGTGTCGGAGAAGGACATCCAGGATCTGAAGTTTGGGGTCGAGCAGGATGTTGATATGGTG
TTTGCGTCATTCATCCGCAAGGCATCTGATGTCCATGAAGTTAGGAAGGTCCTGGGAGAGAAGGGAAAGAACATCAAGAT
TATCAGCAAAATCGAGAATCATGAGGGGGTTCGGAGGTTTGATGAAATCCTGGAGGCCAGTGATGGGATCATGGTGGCTC
GTGGTGATCTAGGCATTGAGATTCCTGCAGAGAAGGTCTTCCTTGCTCAGAAGATGATGATTGGACGGTGCAACCGAGCT
GGGAAGCCTGTCATCTGTGCTACTCAGATGCTGGAGAGCATGATCAAGAAGCCCCGCCCCACTCGGGCTGAAGGCAGTGA
TGTGGCCAATGCAGTCCTGGATGGAGCCGACTGCATCATGCTGTCTGGAGAAACAGCCAAAGGGGACTATCCTCTGGAGG
CTGTGCGCATGCAGCACCTGATAGCTCGTGAGGCTGAGGCAGCCATGTTCCACCGCAAGCTGTTTGAAGAACTTGTGCGA
GCCTCAAGTCACTCCACAGACCTCATGGAAGCCATGGCCATGGGCAGCGTGGAGGCTTCTTATAAGTGTTTAGCAGCAGC
TTTGATAGTTCTGACGGAGTCTGGCAGGTCTGCTCACCAGGTGGCCAGATACCGCCCACGTGCCCCCATCATTGCTGTGA
CCCGGAATCCCCAGACAGCTCGTCAGGCCCACCTGTACCGTGGCATCTTCCCTGTGCTGTGCAAGGACCCAGTCCAGGAG
GCCTGGGCTGAGGACGTGGACCTCCGGGTGAACTTTGCCATGAATGTTGGCAAGGCCCGAGGCTTCTTCAAGAAGGGAGA
TGTGGTCATTGTGCTGACCGGATGGCGCCCTGGCTCCGGCTTCACCAACACCATGCGTGTTGTTCCTGTGCCGTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 880 .46 RPM
SRP007412_cerebellum 977 .34 RPM
SRP007412_heart 361 .03 RPM
SRP007412_kidney 355 .48 RPM
SRP007412_liver 65 .27 RPM
SRP007412_testis 495 .83 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000013504 ortholog_one2one 1 retrogene
retro_chof_1430,
Callithrix jacchus ENSCJAG00000018473 ortholog_one2one 1 retrogene
retro_cjac_236,
Felis catus ENSFCAG00000000653 possible_ortholog 1 retrogene
retro_fcat_105,
Homo sapiens ENSG00000067225 ortholog_one2one 2 retrogenes
retro_hsap_210, retro_hsap_3418,
Gorilla gorilla ENSGGOG00000005062 ortholog_one2one 1 retrogene
retro_ggor_281,
Macropus eugenii ENSMEUG00000004506 ortholog_one2one 3 retrogenes
retro_meug_1482, retro_meug_2043, retro_meug_912,
Macaca mulatta ENSMMUG00000023454 possible_ortholog 1 retrogene
retro_mmul_183,
Nomascus leucogenys ENSNLEG00000013869 ortholog_one2one 3 retrogenes
retro_nleu_1859, retro_nleu_2319, retro_nleu_2716,
Rattus norvegicus ENSRNOG00000011329 possible_ortholog 6 retrogenes
retro_rnor_1120, retro_rnor_2050, retro_rnor_2253, retro_rnor_2703, retro_rnor_515, retro_rnor_830,
Sarcophilus harrisii ENSSHAG00000010300 ortholog_one2many 1 retrogene
retro_shar_90,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_335 87.65 61.02
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2. retro_ptro_2322 82.83 55.74
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Download FASTA sequences of all ENSPTRG00000007246 retrocopies