Parental gene: | CTAGE5, ENSPTRG00000006297 |
| Aliases: | None |
| Description: | None |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 14:38267669..38350502(+) |
>ENSPTRG00000006297
ATGGAGGAGCCCGGGGCTACCCCTCAACCGTATTTGGGGCTGCTCCTGGAGGAGCTACGCAGGGTTGTGGCAGCACTGCC
TGAAGGTATGAGACCAGATTCTAATCTTTATGGTTTTCCATGGGAATTGGTGATATGTGCAGCTGTTGTTGGATTTTTTG
CTGTTCTCTTTTTTTTGTGGAGAAGTTTTAGATCGGTTAGGAGTCGGCTTTATGTGGGACGAGAGAAAAAGCTTGCTCTA
ATGCTTTCTGGACTAATTGAAGAAAAAAGTAAACTACTTGAAAAATTTAGCCTTGTTCAAAAAGAGTATGAAGGCTATGA
AGTAGAGTCATCTTTAAAGGATGCCAGCTTTGAGAAGGAGGCAACAGAAGCACAAAGTTTGGAGGCAACCTGTGAAAAGC
TGAACAGGTCCAATTCTGAACTTGAGGATGAAATACTCTGTCTAGAAAAAGAGTTAAAAGAAGAGAAATCCAAACATTCT
GAACGAGATGAATTGATGGCGGATATTTCAAAAAGGATACAGTCTCTAGAAGATGAGTCAAAATCCCTCAAATCACAAGT
AGCTGAAGCCAAAATGACCTTCAAGATATTTCAAATGAATGAAGAACGACTGAAGATAGCAATAAAAGATGCTTTGAATG
AAAATTCTCAACTTCAGGAAAGCCAGAAACAGCTTTTGCAAGAAGCTGAAGTATGGAAAGAACAAGTGAGTGAACTTAAT
AAACAGAAAGTAACATTTGAAGACTCCGAAGTACATGCAGAACAAGTTCTAAATGATAAAGAAAGTCACATCAAGACTCT
GACTGAACGCTTGTTAAAGATGAAAGATTGGGCTGCTATGCTTGGAGAAGACATAACAGATGATGATAACTTGGAATTAG
AAATGAACAGTGAATCGGAAAATGGTGCTTACTTAGATAATCCTCCAAAAGGAGCTTTGAAGAAACTGATTCATGCTGCT
AAGTTAAATGCTTCTTTAAAAACCTTAGAAGGAGAAAGAAACCAAATTTATATTCAGTTATCTGAAGTTGATAAAACAAA
GGAAGAGCTTACAGAGCATATTAAAAATCTTCAGACTGAACAAGCATCTTTGCAGTCAGAAAACACACATTTTGAAAATG
AGAATCAGAAGCTTCAACAGAAACTTAAAGTAATGACTGAATTATATCAAGAAAATGAAATGAAACTCCACAGGAAATTA
ACAGTAGAGGAAAATTATCGGTTAGAGAAAGAAGAGAAACTTTCTAAAGTAGATGAAAAGATCAGCCATGCCACTGAAGA
GCTGGAGACCTATAGAAAGCGAGCCAAAGATCTTGAAGAAGAATTGGAGAGAACTATTCATTCTTATCAAGGGCAGATTA
TTTCCCATGAGAAAAAAGCACATGATAATTGGCTGGCAGCTCGGAATGCTGAAAGAAACCTCAATGATTTAAGGAAAGAA
AATGCTCACAACAGACAAAAATTAACTGAAACAGAGCTTAAATTTGAACTTTTAGAAAAAGATCCTTATGCACTCGATGT
TCCAAATACAGCATTTGGCAGAGAGCATTCCCCATATGGTCCCTCACCATTGGGTTGGCCTTCATCTGAAACAAGAGCTT
TTCTCTCTCCTCCAACTTTGTTGGAGGGTCCACTCAGACTCTCACCTTTGCTTCCAGGGGGAGGAGGAAGAGGCTCACGA
GGCCCAGGGAATCCTCTGGACCATCAGATTACCAATGAAAGAGGAGAATCAAGCTGTGATAGGTTAACCGATCCTCATAG
GGCTCCCTCTGACACTGGGTCTCTGTCACCTCCATGGGACCAGGACCGTAGGATGATGTTTCCTCCGCCAGGACAATCAT
ATCCTGATTCAGCCCTTCCTCCACAAAGGCAAGACAGATTTTGTTCTAATTCTGGTAGACTGTCTGGACCAGCAGAACTC
AGAAGTTTTAATATGCCTTCTTTGGATAAAATGGATGGGTCAATGCCTTCAGAAATGGAATCCAGTAGAAATGATACCAA
AGATGATCTTGGTAATTTAAATGTGCCTGATTCATCTCTCCCCGCTGAAAATGAAGCCACTGGCCCTGGCTTTGTTCCTC
CACCTCTTGCTCCAATCAGAGGTCCGTTGTTTCCAGTGGATACAAGAGGCGCATTCTTGAGAAGAGGACCTCCTTTCCCC
CCACCTCCTCCAGGAGCCATGTTTGGAGCTTCTCGAGATTATTTTCCACCAAGGGATTTCCCAGGTCCACCACCTGCTCC
ATTTGCAATGAGAAATGTCTATCCACCGAGGGGTTTTCCTCCTTACCTTCCCCCAAGACCTGGATTTTTCCCCCCACCCC
CACATTCTGAAGGTAGAAGTGAGTTCCCCTCAGGTTTGATTCCACCTTCAAATGAGCCTGCTACTGAACATCCAGAACCA
CAGCAAGAAACCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 10 .90 RPM |
| SRP007412_cerebellum | 9 .86 RPM |
| SRP007412_heart | 11 .02 RPM |
| SRP007412_kidney | 54 .97 RPM |
| SRP007412_liver | 36 .20 RPM |
| SRP007412_testis | 20 .44 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000016105 | ortholog_one2many | 4 retrogenes | |
| Cavia porcellus | ENSCPOG00000026514 | possible_ortholog | 2 retrogenes | |
| Homo sapiens | ENSG00000150527 | possible_ortholog | 3 retrogenes | |
| Homo sapiens | ENSG00000258941 | ortholog_many2many | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000011990 | possible_ortholog | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000004121 | ortholog_many2many | 10 retrogenes | |
| Pongo abelii | ENSPPYG00000005768 | possible_ortholog | 9 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000015890 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_466 | 88.73 | 86.94 | Please wait, loading  |
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| 2. | retro_ptro_821 | 86.92 | 80.60 | Please wait, loading |
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| 3. | retro_ptro_826 | 85.53 | 87.31 | Please wait, loading |
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| 4. | retro_ptro_868 | 87.76 | 84.95 | Please wait, loading |
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| 5. | retro_ptro_876 | 82.85 | 63.68 | Please wait, loading |
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| 6. | retro_ptro_1286 | 87.74 | 84.95 | Please wait, loading |
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| 7. | retro_ptro_1712 | 83.57 | 86.82 | Please wait, loading |
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| 8. | retro_ptro_2503 | 85.53 | 85.45 | Please wait, loading |
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| 9. | retro_ptro_2580 | 85.02 | 81.22 | Please wait, loading |
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| 10. | retro_ptro_2880 | 88.35 | 66.79 | Please wait, loading |
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Download FASTA sequences of all ENSPTRG00000006297 retrocopies