Parental gene:

ENSCJAG00000016105

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:10:63900678..64021899(+)


>ENSCJAG00000016105
ATGGCAAAACTTGGCGTTCACAGAATCCTTCTTGTGGCTATTTCTCTGACAAAGTGTTTGGAAAGTACAAAACTGCTGGC
AGACCTTAAAAAATGTGGCGACTTGGAATGTGAAACTTTAATAAGCAGAGTCTCAGCCATGAGAGATTACAGAGGACCAG
ACTGCCGATACCTGAACTTCACTAAGGGAGAAGAGATATCTGTTTATGTTAAACTTGCAGGAGAAAGAGAAGATTTGTGG
GCAGGAAGTAAAGGAAAGGAGTTTGGATACTTTCCGAGAGATGCAGTCCAGATTGAAGAGGTGTTCATATCTGAGGAGAT
TCAGATATCTACTAAAGAATCTGACTTTCTTTGCCTTCTTGGAGTGAGCTATACATTTGACAATGAAGATAGTGAATTAA
ACAGTGATTATGGTGAAAATACACATCCTTATGAAGAAGATAAAGATGAAAAATCTAGTGTACATGAAAGTGATATTCAG
ATAGAACCTGAATTTTATGCAACTTATGTAAGTACTTTGTTTGAAGACCAGTTTCCAGCATTAGAGGCTCCCGAAGAGAT
CAGAAGTACCAGTAAATCAAAACACCGGGAAGAAGTAGTTGCTGAAAGTGTGGAACAGGATCATATTCCAGAAGTGCATG
TCCTACCATCTTCAGCTGCACCTGGAGTCAAAGAATGGTTTGGATTGGTAAGAGAACAAGCTGAAGAGAAGGCTTTTGAA
TCTGTTATTGAACCTATACAAGGAAGTGCATTTCGAAGTAGAAAAATAGCAGTGGAAGATGAGAATGACCTAGAGGAATT
AAATAATATTGAGCCTCAAACAGAACATCAGCAAGAATCTGAATCAGAAATTGCTTCAGTGCCAAAGACACAGTCTGAAC
TAGCATCTGAGTCAGAGCACATTCCCAAACCTCAACCCACTGGTTGGTTTGGTGGTGGATTTACAAGTTATTTAGGTTTT
GGAGATGCGGATACAGGGCTGGAATTATTAGCAGAAGAAAGCAATCCACCACTACAAGATTTTCCCAATTCTATATCATC
TGATGAAGAAGCCACAGTTCCATGTACAAAAATATTAACAGAAAAAGAAGACACAATCACTAATGACAGCTTGAGTCTCA
AGGCAAGTTGGTTTGATTTTGGTTTTGTTATGCTAGGTTTTGCATATGCCAAGGAAGATAAAATTATGTTAGATAACAGG
AAAAATGAAGAAGATGGTGGGGCAGATGAACACGAACAACCTCCAACAAGTGAATTTGATGCTGAAAAAGAACAAGAAAT
AGAAATGATAAAAATTATGGAAACAGAAGATGAAATAGACAAGAAATCAGTCTTAGAAAAAACAGAGGAATCTGATACCT
TCCCATATTTGAAAAGGTTCTTGTATAATTTTGACAACCCTTGGAACTTCCAGAACATTCCAAAGAAAAAAGAATTGTCA
TTTCCCAAACAGATACTGGATCAAAATAATGTAATGGAAAATGAAGAAAGAGAAGAATTTTCCGTTGACAATTATCCCAC
AGATAATACAAAAGTTATGATGTTTGAAAGTTCATACATTCAGTCAGAAGATGCTTCTGAATTTCAGATTCTGAAATACT
TATTCCAAATTGATGTTTATGATTTCATGAATTCTGCATTATCACCAATTGTAATTCTTACAGAAAGGGTTGTGGCAGCA
CTGCCTGAAGGTATGAGACCAGATTCTAATCCTTATGGTTTTCCATGGGAATTGGTGATATGTGCAGCTGTTGTTGGATT
TTGTGCTGTTCTCTTTTTTTTGTGGAGAAGTTTTAGATCGGTTAGGAGTCGGCTATATGTGGGAAGAGAGAAAAAGCTTG
CTGTAATGCTTTCTGGACTAATTGAAGAAAAATGTAAACTACTTGAAAAATTTAGCCTTGTTCAAAAAGAGTATGAAGGC
TATGAAGTAGAGTCATCTTTAAAGGATGCCAGCTTTGAGAAGGAGGCAACAGAAGCACAAAGTTTGGAGGCAACCTGTGA
AAAGCTGAACAGGTCCAATTCTGAACTGGAAGATGAAATACTCTGTCTAGAAAAAGAGTTAAAAGAAGAGAAATCTAAAC
ATTCTGAGCAAGATGAATTGATGGCAGATATTTCAAAAAGGATACAGTCTCTAGAAGATGAGTCAAAATCCATCAAATCA
CAAGTAGCTGAAGCCAAAATGACCTTCAAGATATTTCAAATGAATGAAGAAAGACTGAGGATAGCAATAAAAGATGCTTT
GAATGAAAATTCTCAACTTCAGGAAAGCCAGAAACAGCTTTTACAAGAAGCTGAAGTATGGAAAGAACAAGTGAGTGAAC
TTAATAAACAGAAAATAACATTTGAAGACTCCAAAGTACATGCAGAAGAAGTTCTAAATGATAAAGAAAATCACATCAAG
ATTCTGACTGAACGCTTGATAAAGATGAAAGATTGGGCCGCTATACTTGGAGAAGAGATAACGGATGATGATAACTTGGA
ATTAGAAATGAACAGTGAATCAGAAAATGGTGCTTACTTAGATAATCCTCCAAAAGGAGCATTGAAGAAACTGATTCATG
CTGCTAAGTTAAATGCTTCTTTAAAAACCTTAGAAGGAGAAAGAAACCAAATATATATTCAGTTATCTGATGTTGATAAG
ACAAAGGAAGAGCTTACAGAGCATATTAAAAATCTTCAGACTGAACAAGCATCTTTGCAGTCAGAAAACACACATTTTGA
AAGTGAGAATCAGAAGCTTCAACAGAAACTTAAAGTAATGACTGAATTATATCAAGAAAATGAAATGAAACTCCACAGGA
AATTAACAGTAGAGGAAAATTTCCGGTTAGAGAAAGAAGAAAAACTTTGTAAAGTAGACGAAAAGATCAGCCATGCCACT
GAAGAGCTGGAGACCTATAGAAAGCGAGCCAAAGATCTTGAAGAAGAATTGGAGAGAACTATTCATTCTTATCAAGGGCA
GATTATTTCCCATGAGAAAAAAGCACATGATAATTGGTTGGCAGCTCGAACTGCTGAAAGAAACCTCAATGATTTAAGGA
AAGAAAATGCTCACAACAGACAAAAATTAACTGAAACAGAGTTGAAATTTGAACTTTTAGAAAAAGATCCTTACGCTCTT
GATGTTCCAAATACAGCATTTGGCAGAGAGCATTCCCCATATGGTCCCTCACCATTGGGTCGGCCTTCATCTGAAACGAG
AGCTTTTCTCTCTCCTCCAACTTTGTTGGAGGGTCCACTCAGACTCTCACCTTTGCTTCCAGGGGGAGGAGGAAGAGGCC
CAAGAGGCCCGGGGAATCCTCTGGACCATCAGATTACCAACGAAAGAGGAGAATCAAGCTGTGATAGGTTAACTGATCCT
CATAGGGCTCCTTCTGACACTGGGTCCCTGTCACCTCCATGGGAACAGGACCGTAGGTTGATGTTTCCTCCACCAGAAGG
ACAATCATATCCTGATTCAGCTCTTCATCCACAAAGGCAAGACAGATTTTATTCTAATTCTGGTAGACTGTCTGGACCAG
CAGAACTCAGAAGTTTTAATATGCCTTCTTTGGATAAAATGGATGGGTCAGTGCCTTCAGAAATGGAATCCAGTAGAAAT
GATACCAAAGATGATCTTGGTAATTTAAATGTGCCTGATGCATCTCTCCCCGCTGAAAATGAAGCAGCTGCCCCTGGCTT
TGTTCCTCCACCTCTTGCTCCTATGAGAGGTCCATTGTTTCCAGTGGATACAAGGGGCCCCTTCGTGAGAAGAGGACCTC
CTTTCCCCCTACCTCCTCCAGGAACCATGTTTGGAGCTTCTCGAGATTATTTTCCACCAAGGGATTTCCCAGGTCCACCA
CATGCTCCATTTGCAATGAGAAATGTCTATCCACCGAGGGGTTTTCCTTCTTACCTTCCCCCAAGACCTGGATTTTTACC
CCCGCCCCCGAATTCTGAAGGTAGAAGTGAGTTCCCTTCAGGGTTGATTGCACCTTCGAATGAGCCTGCTCCTGAACATC
CAGAACCACAGCGAGAAACCTGA

Library Parental gene expression (RPM)
SRP051959_colon 25 .65 RPM
SRP051959_heart 22 .82 RPM
SRP051959_kidney 127 .75 RPM
SRP051959_liver 139 .82 RPM
SRP051959_lung 25 .96 RPM
SRP051959_lymph_node 24 .68 RPM
SRP051959_skeletal_muscle 20 .96 RPM
SRP051959_spleen 23 .21 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000026514 possible_ortholog 2 retrogenes
retro_cpor_189, retro_cpor_727,
Homo sapiens ENSG00000150527 ortholog_one2many 3 retrogenes
retro_hsap_1201, retro_hsap_3691, retro_hsap_640,
Homo sapiens ENSG00000258941 ortholog_one2many 1 retrogene
retro_hsap_78,
Gorilla gorilla ENSGGOG00000011990 ortholog_one2one 1 retrogene
retro_ggor_936,
Nomascus leucogenys ENSNLEG00000004121 ortholog_one2many 10 retrogenes
retro_nleu_1218, retro_nleu_1690, retro_nleu_2087, retro_nleu_2103, retro_nleu_2148, retro_nleu_2600, retro_nleu_2951, retro_nleu_3017, retro_nleu_3077, retro_nleu_688,
Pongo abelii ENSPPYG00000005768 ortholog_one2one 9 retrogenes
retro_pabe_1001, retro_pabe_1002, retro_pabe_1007, retro_pabe_1055, retro_pabe_1060, retro_pabe_1588, retro_pabe_2119, retro_pabe_29, retro_pabe_3024,
Pan troglodytes ENSPTRG00000006297 ortholog_one2many 10 retrogenes
retro_ptro_1286, retro_ptro_1712, retro_ptro_2503, retro_ptro_2580, retro_ptro_2880, retro_ptro_466, retro_ptro_821, retro_ptro_826, retro_ptro_868, retro_ptro_876,
Ictidomys tridecemlineatus ENSSTOG00000015890 possible_ortholog 1 retrogene
retro_itri_95,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_921 66.43 54.14
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2. retro_cjac_1747 69.60 64.55
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3. retro_cjac_2711 71.18 64.30
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4. retro_cjac_3217 75.41 74.88
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Download FASTA sequences of all ENSCJAG00000016105 retrocopies