Parental gene:

ptr-mir-621, ENSPTRG00000005809

Aliases:None
Description:ptr-mir-621 [Source:miRBase;Acc:MI0008819]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:GL392075.1:1844130..1867525(+)


>ENSPTRG00000005809
ATGAAATCCAATCCTGCTATCCAGGCTGCCATTGACCTCACAGCGGGGGCTGCAGGGGGTACAGCATGTGTACTGACCGG
GCAGCCCTTTGACACAATGAAAGTGAAGATGCAGACGTTCCCTGACCTGTACCGGGGCCTCACCGACTGCTGCCTGAAGA
CTTACTCCCAGGTGGGCTTCCGTGGCTTCTACAAGGGGACCAGTCCAGCACTAATCGCCAACATCGCTGAGAACTCAGTC
CTCTTCATGTGCTACGGCTTCTGCCAGCAGGTGGTGCGGAAGGTGGCTGGATTGGACAAGCAGGCAAAGCTGAGTGATCT
GCAGAATGCAGCTGCCGGTTCCTTCGCCTCTGCCTTTGCTGCACTGGTGCTCTGCCCCACGGAGCTTGTGAAGTGCCGGC
TGCAGACCATGTATGAGATGGAGACATCAGGGAAGATAGCCAAGAGCCAGAATACAGTGTGGTCTGTCATCAAAAGTATT
CTTAGGAAAGATGGCCCCTTGGGGTTCTACCATGGACTCTCAAGCACTTTACTTCGAGAAGTACCAGGCTATTTCTTCTT
CTTCGGTGGCTATGAACTGAGCCGGTCCTTTTTTGCATCAGGGAGATCAAAAGATGAATTAGGCCCTGTACCTTTGATGT
TAAGTGGTGGAGTTGGTGGGATTTGCCTCTGGCTTGCGGTATACCCAGTGGATTGTATCAAATCCAGAATTCAAGTTCTT
TCCATGTCTGGAAAACAGGCAGGATTTATCAGAACCTTTATAAGTGTTGTGAAAGATGAAGGAATAACGGCCTTATATTC
TGGACTGAAACCTACTATGATTCGAGCATTCCCTGCCAATGGAGCACTCTTTTTGGCCTACGAATATAGCAGGAAGTTGA
TGATGAACCAGTTGGAAGCATACTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 4 .43 RPM
SRP007412_cerebellum 3 .84 RPM
SRP007412_heart 3 .38 RPM
SRP007412_kidney 9 .62 RPM
SRP007412_liver 52 .64 RPM
SRP007412_testis 26 .56 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000017797 ortholog_one2many 1 retrogene
retro_cjac_1776,
Cavia porcellus ENSCPOG00000005570 ortholog_one2many 2 retrogenes
retro_cpor_105, retro_cpor_107,
Equus caballus ENSECAG00000007666 possible_ortholog 1 retrogene
retro_ecab_72,
Homo sapiens ENSG00000102743 ortholog_one2one 1 retrogene
retro_hsap_44,
Gorilla gorilla ENSGGOG00000025261 ortholog_one2one 1 retrogene
retro_ggor_2294,
Microcebus murinus ENSMICG00000007218 ortholog_one2one 1 retrogene
retro_mmur_18,
Macaca mulatta ENSMMUG00000022585 ortholog_one2one 1 retrogene
retro_mmul_199,
Nomascus leucogenys ENSNLEG00000001185 ortholog_one2one 1 retrogene
retro_nleu_1704,
Otolemur garnettii ENSOGAG00000009380 ortholog_one2one 1 retrogene
retro_ogar_490,
Pongo abelii ENSPPYG00000005307 ortholog_one2one 1 retrogene
retro_pabe_82,
Pteropus vampyrus ENSPVAG00000010393 possible_ortholog 1 retrogene
retro_pvam_15,
Ictidomys tridecemlineatus ENSSTOG00000007840 ortholog_one2one 1 retrogene
retro_itri_726,
Tupaia belangeri ENSTBEG00000017239 ortholog_one2one 1 retrogene
retro_tbel_4583,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_2303 87.71 100.00
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Download FASTA sequences of all ENSPTRG00000005809 retrocopies