Parental gene:

GLUD2, ENSPTRG00000002711

Aliases:None
Description:Pan troglodytes glutamate dehydrogenase 2 (GLUD2), nuclear gene encoding mitochondrial protein, mRNA. [Source:RefSeq mRNA;Acc:NM_001009004]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:10:86524828..86570646(-)


>ENSPTRG00000002711
ATGTACCGCTACCTGGGCGAAGCGCTGTTGCTGTCCCGGGCCGGGCCCGCTGCCCTGGGCTCGGCGTCCGCCGACTCGGC
CGCGTTGCTGGGCTGGGCCCGGGGACAGCCCGCCGCCGCCCCGCAGCCGGGGCTGGCATTGGCCGCCCGGCGCCACTACA
GCGAGGCGGTGGCCGACCGCGAGGACGACCCCAACTTCTTCAAGATGGTGGAGGGCTTCTTCGATCGCGGCGCCAGCATC
GTGGAGGACAAGCTGGTGGAGGACCTGAGGACCCGGGAGAGCGAGGAGCAGAAGCGGAACCGGGTGCGCGGCATCCTGCG
GATCATCAAGCCCTGCAACCATGTGCTGAGTCTCTCCTTCCCCATCCGGCGCGACGACGGCTCCTGGGAGGTCATCGAAG
GCTACCGGGCCCAGCACAGCCAGCACCGCACGCCCTGCAAGGGAGGTATCCGTTACAGCACTGATGTGAGTGTAGATGAA
GTAAAAGCTTTGGCTTCTCTGATGACATACAAGTGTGCAGTGGTTGATGTGCCGTTTGGGGGTGCTAAAGCTGGTGTTAA
GATCAATCCCAAGAACTATACCGATAATGAATTGGAAAAGATCACAAGGAGGTTCACCATGGAGCTAGCAAAAAAGGGCT
TTATTGGTCCTGGCATTGATGTGCCTGCTCCAGACATGAGCACAGGTGAGCGGGAGATGTCCTGGATCGCTGATACCTAT
GCCAGCACCATAGGGCACTATGATATTAATGCACACGCCTGTGTTACTGGTAAACCCATCAGCCAAGGGGGAATCCATGG
ACGCATCTCTGCTACTGGCCGTGGTGTCTTCCATGGGATTGAAAATTTCATCAATGAAGCTTCTTACATGAGCATTTTAG
GAATGACACCAGGGTTTGGAGATAAAACATTTGTTGTTCAGGGATTTGGTAATGTGGGCCTACACTCTATGAGATATTTA
CATCGTTTTGGTGCTAAATGTATTGCTGTTGGTGAGTCTGAGGGGAGTATATGGAATCCAGATGGTATTGACCCAAAGGA
ACTGGAAGACTTCAAATTGCAACATGGGTCCATTCTGGGCTTCCCCAAGGCAAAGCCCTATGAAGGAAGCATCTTGGAGG
CCGACTGTGACATACTGATCCCAGCTGCCAGTGAGAAGCAGTTGACCAAATCCAACGCACCCAGAGTCAAAGCCAAGATC
ATTGCTGAAGGTGCCAATGGGCCAACAACTCCAGAAGCTGACAAGATCTTCCTGGAGAGAAACATTATGGTTATTCCAGA
TCTCTACTTGAATGCTGGAGGAGTGACAGTATCTTACTTTGAGTGGCTGAAGAATCTAAATCATGTCAGCTATGGCCGTT
TGACCTTCAAATATGAAAGGGATTCTAACTACCACTTGCTCATGTCTGTTCAAGAGAGTTTAGAAAGAAAATTTGGAAAG
CATGGTGGAACTATTCCCATTGTACCCACGGCAGAGTTCCAAGACAGGATATCGGGTGCATCTGAGAAAGACATCGTGCA
CTCTGGCTTGGCATACACAATGGAGCGTTCTGCCAGGCAAATTATGCGCACAGCCATGAAGTATAACCTGGGATTGGACC
TGAGAACAGCTGCCTATGTTAATGCCATTGAGAAAGTCTTCAAAGTGTACAATGAAGCTGGTGTGACCTTCACATAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 140 .90 RPM
SRP007412_cerebellum 104 .43 RPM
SRP007412_heart 109 .18 RPM
SRP007412_kidney 315 .57 RPM
SRP007412_liver 455 .56 RPM
SRP007412_testis 31 .30 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000007540 ortholog_one2one 2 retrogenes
retro_btau_1413, retro_btau_1741,
Canis familiaris ENSCAFG00000016095 ortholog_one2many 1 retrogene
retro_cfam_747,
Choloepus hoffmanni ENSCHOG00000001101 possible_ortholog 1 retrogene
retro_chof_2002,
Callithrix jacchus ENSCJAG00000011633 ortholog_one2one 1 retrogene
retro_cjac_2830,
Dipodomys ordii ENSDORG00000009767 ortholog_one2one 1 retrogene
retro_dord_400,
Equus caballus ENSECAG00000007371 ortholog_one2one 2 retrogenes
retro_ecab_886, retro_ecab_919,
Echinops telfairi ENSETEG00000019638 ortholog_one2one 2 retrogenes
retro_etel_141, retro_etel_2024,
Homo sapiens ENSG00000148672 ortholog_one2one 1 retrogene
retro_hsap_31,
Gorilla gorilla ENSGGOG00000015770 ortholog_one2one 1 retrogene
retro_ggor_2954,
Loxodonta africana ENSLAFG00000012059 ortholog_one2one 1 retrogene
retro_lafr_504,
Microcebus murinus ENSMICG00000016526 ortholog_one2one 1 retrogene
retro_mmur_524,
Monodelphis domestica ENSMODG00000002756 ortholog_one2many 1 retrogene
retro_mdom_124,
Nomascus leucogenys ENSNLEG00000011658 ortholog_one2one 1 retrogene
retro_nleu_36,
Otolemur garnettii ENSOGAG00000003641 ortholog_one2one 1 retrogene
retro_ogar_2757,
Procavia capensis ENSPCAG00000008662 ortholog_one2many 1 retrogene
retro_pcap_11,
Pongo abelii ENSPPYG00000002827 ortholog_one2one 3 retrogenes
retro_pabe_3109, retro_pabe_3213, retro_pabe_79,
Ictidomys tridecemlineatus ENSSTOG00000012843 ortholog_one2one 1 retrogene
retro_itri_737,
Tarsius syrichta ENSTSYG00000001578 ortholog_one2one 1 retrogene
retro_tsyr_313,
Tursiops truncatus ENSTTRG00000008145 ortholog_one2one 1 retrogene
retro_ttru_950,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_3162 95.34 100.00
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2. retro_ptro_3283 85.79 99.10
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3. retro_ptro_3285 85.79 99.10
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4. retro_ptro_3290 85.61 99.10
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Download FASTA sequences of all ENSPTRG00000002711 retrocopies