Parental gene:

ENSPPYG00000025875

Aliases:None
Description:None
Organism:Orangutan (Pongo abelii)
Coordinates:2b:12855681..12867517(+)


>ENSPPYG00000025875
CGAAAAAAACAAGAACATCTTACACCTGGAGTAGTCTATGTGCGCCACCTACCTAACCTACTTAACGAAACCCAGATCTT
TTCATATTTCTCCCAGTTTGGCACTGTGACACGGTTCAGACTGTCCAGAAGTAAAAGGACTGGAAATAGCAAAGGCTATG
CATTTGTGGAGTTTGAGTCTGAGGATGTTGCCAAGATAGTTGCTGAAACAATGAACAACTACCTGTTTGGTGAAAGACTC
CTGAAGTGTCATTTTATGCCACCTGAAAAAGTACATAAAGAACTCTTTAAAGACTGGAATATTCCATTTAAGCAGCCATC
ATATCCATCAGTGAAACGTTATAATCGGAATCGGACACTAACACAAAAGCTACGGATGGAGGAGCGATTTAAAAAGAAAG
AAAGATTACTCAGGAAGAAATTAGCTAAAAAAGGAATTGATTATGATTTTCCTTCTTTGATTTTACAGAAAACGGAAAGT
ATTTCAAAAACTAATCGTCAGACATCTACAAAAGGCCAGGTTTTACGTAAGAAGAAGAAAAAAGTTTCAGGTACTCTTGA
CACTCCTGAGAAGACTGTGGATAGCCAGGGCCCCACACCAGTTTGTACACCAACATTTTTGGAGAGGCGAAAATCTGAAG
TGGCTGAACTGAATGATGATGATAAAGATGATGAAATAGTTTTCAAACAGCCCATATCCAGTGTAAAAGAAGAAATACAA
GAGACTCAAACACCTACACATTCACGGAAAAAAAGACGAAGAAAAAGCAATCAGTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 6 .14 RPM
SRP007412_cerebellum 9 .48 RPM
SRP007412_heart 5 .69 RPM
SRP007412_kidney 8 .62 RPM
SRP007412_liver 9 .55 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000019387 ortholog_one2many 1 retrogene
retro_btau_1516,
Choloepus hoffmanni ENSCHOG00000002227 ortholog_one2many 5 retrogenes
retro_chof_1061, retro_chof_1449, retro_chof_1735, retro_chof_236, retro_chof_2480,
Callithrix jacchus ENSCJAG00000013386 ortholog_one2many 1 retrogene
retro_cjac_3076,
Dasypus novemcinctus ENSDNOG00000005017 ortholog_one2many 2 retrogenes
retro_dnov_1869, retro_dnov_2487,
Erinaceus europaeus ENSEEUG00000008535 ortholog_one2many 3 retrogenes
retro_eeur_530, retro_eeur_550, retro_eeur_91,
Homo sapiens ENSG00000155438 ortholog_one2many 5 retrogenes
retro_hsap_1077, retro_hsap_1596, retro_hsap_1609, retro_hsap_1611, retro_hsap_553,
Gorilla gorilla ENSGGOG00000023498 ortholog_one2many 4 retrogenes
retro_ggor_1213, retro_ggor_1923, retro_ggor_2225, retro_ggor_850,
Loxodonta africana ENSLAFG00000030731 ortholog_one2many 1 retrogene
retro_lafr_500,
Microcebus murinus ENSMICG00000015787 ortholog_one2many 1 retrogene
retro_mmur_990,
Myotis lucifugus ENSMLUG00000006481 ortholog_one2many 2 retrogenes
retro_mluc_1217, retro_mluc_1369,
Macaca mulatta ENSMMUG00000020928 ortholog_one2many 11 retrogenes
retro_mmul_1444, retro_mmul_1544, retro_mmul_2149, retro_mmul_2151, retro_mmul_2225, retro_mmul_2226, retro_mmul_2389, retro_mmul_690, retro_mmul_696, retro_mmul_697, retro_mmul_752,
Monodelphis domestica ENSMODG00000000152 ortholog_many2many 2 retrogenes
retro_mdom_1271, retro_mdom_737,
Nomascus leucogenys ENSNLEG00000001163 ortholog_one2many 4 retrogenes
retro_nleu_1756, retro_nleu_1942, retro_nleu_2022, retro_nleu_669,
Pan troglodytes ENSPTRG00000012419 ortholog_one2many 5 retrogenes
retro_ptro_1072, retro_ptro_1077, retro_ptro_1080, retro_ptro_1378, retro_ptro_415,
Pteropus vampyrus ENSPVAG00000016707 ortholog_one2many 1 retrogene
retro_pvam_134,
Sorex araneus ENSSARG00000006252 ortholog_one2many 1 retrogene
retro_sara_362,
Tupaia belangeri ENSTBEG00000001123 ortholog_one2many 4 retrogenes
retro_tbel_1731, retro_tbel_3479, retro_tbel_4589, retro_tbel_926,
Vicugna pacos ENSVPAG00000005847 ortholog_one2many 2 retrogenes
retro_vpac_136, retro_vpac_265,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_510 79.15 98.84
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2. retro_pabe_2248 54.55 70.93
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Download FASTA sequences of all ENSPPYG00000025875 retrocopies