Parental gene:

MAD2L1, ENSPPYG00000015029

Aliases:None
Description:MAD2 mitotic arrest deficient-like 1 (yeast) [Source:HGNC Symbol;Acc:6763]
Organism:Orangutan (Pongo abelii)
Coordinates:4:124624264..124632098(-)


>ENSPPYG00000015029
ATGCTAACCTACACCTACCGTAGTGTCACACCCGGCACAGCGCGACCAGGTCCACCAACTGCGCCTGCGCGAACCGGCCG
CTCCCGCGAGATCACAGGAAGGCTGAGAGAAAGAGCAGGTCCCCGCTGCGTGGGGCTGGGCTTAAAGGCTCGTCGCGCCT
GCGCAAAGGACCTGACGACGTGCTGCGTCGTTACTTTTGAAACGCTTGGCGGGGAAGTGCTGTTGGAGCCGCTGTGGTTG
CTGTCCGCGGAGTGGAAGCGCGTGCCTTTGTTTGTGTCCCTGGCCATGGCGCTGCAGCTCTCCCGGGAGCAGGGAATCAC
CCTGCGCGGGAGCGCCGAAATCGTGGCCGAGTTCTTCTCATTCGGCATCAACAGCATTTTATATCAGCGTGGCATATATC
CATCTGAAACCTTTACTCGAGTGCAGAAATATGGACTCACCTTGCTTGTAACTACTGATCTTGAGCTCATAAAATACCTA
AATAATGTGGTGGAACAACTGAAAGATTGGTTATACAAGTGTTCAGTTCAGAAACTGGTTGTAGTTATCTCAAATATTGA
AAGTGGTGAGGTCCTGGAAAGATGGCAGTTTGATATTGAGTGTGACAAGACTGCAAAAGATGACAGTGCACCCAGAGAAA
AGTCTCAGAAAGCTATCCAGGATGAAATCCGTTCAGTGATCAGACAGATCACAGCTACAGTGACATTTCTGCCACTGTTG
GAAGTTTCTTGTTCATTTGATCTGCTGATTTATACAGACAAAGATTTGGTTGTACCTGAAAAATGGGAAGAGTCGGGACC
ACAGTTTATTACCAATTCTGAGGAAGTCCGCCTTCGTTCATTTACTACTACAATCCACAAAGTAAATAGCATGGTGGCCT
ACAAAATTCCTGTCAATGACTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 1 .22 RPM
SRP007412_cerebellum 1 .82 RPM
SRP007412_heart 0 .96 RPM
SRP007412_kidney 0 .86 RPM
SRP007412_liver 0 .64 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000012813 ortholog_one2one 2 retrogenes
retro_chof_1340, retro_chof_2524,
Dasypus novemcinctus ENSDNOG00000013456 ortholog_one2one 1 retrogene
retro_dnov_1348,
Erinaceus europaeus ENSEEUG00000009629 possible_ortholog 1 retrogene
retro_eeur_446,
Echinops telfairi ENSETEG00000015756 ortholog_one2one 1 retrogene
retro_etel_724,
Homo sapiens ENSG00000164109 ortholog_one2one 2 retrogenes
retro_hsap_1350, retro_hsap_1707,
Gorilla gorilla ENSGGOG00000002516 ortholog_one2one 1 retrogene
retro_ggor_1281,
Loxodonta africana ENSLAFG00000029619 ortholog_one2many 1 retrogene
retro_lafr_1138,
Myotis lucifugus ENSMLUG00000011092 possible_ortholog 8 retrogenes
retro_mluc_1242, retro_mluc_165, retro_mluc_1802, retro_mluc_1904, retro_mluc_1986, retro_mluc_2434, retro_mluc_609, retro_mluc_696,
Macaca mulatta ENSMMUG00000004875 ortholog_one2one 2 retrogenes
retro_mmul_1292, retro_mmul_1701,
Mus musculus ENSMUSG00000029910 ortholog_one2one 2 retrogenes
retro_mmus_1684, retro_mmus_2573,
Nomascus leucogenys ENSNLEG00000009092 ortholog_one2one 1 retrogene
retro_nleu_1832,
Otolemur garnettii ENSOGAG00000004054 ortholog_one2many 1 retrogene
retro_ogar_199,
Pan troglodytes ENSPTRG00000016401 ortholog_one2one 2 retrogenes
retro_ptro_1156, retro_ptro_925,
Ictidomys tridecemlineatus ENSSTOG00000025410 ortholog_one2many 2 retrogenes
retro_itri_1592, retro_itri_327,
Tupaia belangeri ENSTBEG00000011065 possible_ortholog 3 retrogenes
retro_tbel_4460, retro_tbel_4666, retro_tbel_664,
Tursiops truncatus ENSTTRG00000011017 ortholog_one2one 1 retrogene
retro_ttru_1754,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_1121 95.80 79.33
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2. retro_pabe_1403 63.25 55.33
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Download FASTA sequences of all ENSPPYG00000015029 retrocopies