Parental gene:

MAD2L1, ENSG00000164109

Aliases:None
Description:MAD2 mitotic arrest deficient-like 1 (yeast) [Source:HGNC Symbol;Acc:6763]
Organism:Human (Homo sapiens)
Coordinates:4:120980576..120988229(-)


>ENSG00000164109
ATGGCGCTGCAGCTCTCCCGGGAGCAGGGAATCACCCTGCGCGGGAGCGCCGAAATCGTGGCCGAGTTCTTCTCATTCGG
CATCAACAGCATTTTATATCAGCGTGGCATATATCCATCTGAAACCTTTACTCGAGTGCAGAAATACGGACTCACCTTGC
TTGTAACTACTGATCTTGAGCTCATAAAATACCTAAATAATGTGGTGGAACAACTGAAAGATTGGTTATACAAGTGTTCA
GTTCAGAAACTGGTTGTAGTTATCTCAAATATTGAAAGTGGTGAGGTCCTGGAAAGATGGCAGTTTGATATTGAGTGTGA
CAAGACTGCAAAAGATGACAGTGCACCCAGAGAAAAGTCTCAGAAAGCTATCCAGGATGAAATCCGTTCAGTGATCAGAC
AGATCACAGCTACGGTGACATTTCTGCCACTGTTGGAAGTTTCTTGTTCATTTGATCTGCTGATTTATACAGACAAAGAT
TTGGTTGTACCTGAAAAATGGGAAGAGTCGGGACCACAGTTTATTACCAATTCTGAGGAAGTCCGCCTTCGTTCATTTAC
TACTACAATCCACAAAGTAAATAGCATGGTGGCCTACAAAATTCCTGTCAATGACTGA

Library Parental gene expression (RPM)
bodymap2_adipose 1 .79 RPM
bodymap2_adrenal 5 .92 RPM
bodymap2_brain 8 .32 RPM
bodymap2_breast 3 .68 RPM
bodymap2_colon 3 .98 RPM
bodymap2_heart 2 .05 RPM
bodymap2_kidney 1 .78 RPM
bodymap2_liver 0 .46 RPM
bodymap2_lung 4 .11 RPM
bodymap2_lymph_node 6 .07 RPM
bodymap2_ovary 3 .35 RPM
bodymap2_prostate 3 .79 RPM
bodymap2_skeletal_muscle 1 .04 RPM
bodymap2_testis 26 .07 RPM
bodymap2_thyroid 2 .99 RPM
bodymap2_white_blood_cells 5 .18 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000012813 ortholog_one2one 2 retrogenes
retro_chof_1340, retro_chof_2524,
Dasypus novemcinctus ENSDNOG00000013456 ortholog_one2one 1 retrogene
retro_dnov_1348,
Erinaceus europaeus ENSEEUG00000009629 possible_ortholog 1 retrogene
retro_eeur_446,
Echinops telfairi ENSETEG00000015756 ortholog_one2one 1 retrogene
retro_etel_724,
Gorilla gorilla ENSGGOG00000002516 ortholog_one2one 1 retrogene
retro_ggor_1281,
Loxodonta africana ENSLAFG00000029619 ortholog_one2many 1 retrogene
retro_lafr_1138,
Myotis lucifugus ENSMLUG00000011092 possible_ortholog 8 retrogenes
retro_mluc_1242, retro_mluc_165, retro_mluc_1802, retro_mluc_1904, retro_mluc_1986, retro_mluc_2434, retro_mluc_609, retro_mluc_696,
Macaca mulatta ENSMMUG00000004875 ortholog_one2one 2 retrogenes
retro_mmul_1292, retro_mmul_1701,
Mus musculus ENSMUSG00000029910 ortholog_one2one 2 retrogenes
retro_mmus_1684, retro_mmus_2573,
Nomascus leucogenys ENSNLEG00000009092 ortholog_one2one 1 retrogene
retro_nleu_1832,
Otolemur garnettii ENSOGAG00000004054 ortholog_one2many 1 retrogene
retro_ogar_199,
Pongo abelii ENSPPYG00000015029 ortholog_one2one 2 retrogenes
retro_pabe_1121, retro_pabe_1403,
Pan troglodytes ENSPTRG00000016401 ortholog_one2one 2 retrogenes
retro_ptro_1156, retro_ptro_925,
Ictidomys tridecemlineatus ENSSTOG00000025410 ortholog_one2many 2 retrogenes
retro_itri_1592, retro_itri_327,
Tupaia belangeri ENSTBEG00000011065 possible_ortholog 3 retrogenes
retro_tbel_4460, retro_tbel_4666, retro_tbel_664,
Tursiops truncatus ENSTTRG00000011017 ortholog_one2one 1 retrogene
retro_ttru_1754,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_1350 97.55 99.51
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2. retro_hsap_1707 72.73 64.39
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Download FASTA sequences of all ENSG00000164109 retrocopies