Parental gene:

USP12, ENSPPYG00000005232

Aliases:None
Description:ubiquitin specific peptidase 12 [Source:HGNC Symbol;Acc:20485]
Organism:Orangutan (Pongo abelii)
Coordinates:13:26470644..26593493(-)


>ENSPPYG00000005232
ATGGAAATCCTAATGACAGTCTCCAAATTCGCCTCCATCTGTACCATGGGCGCCAATGCTTCGGCATTAGAGAAAGAGAT
TGGTCCAGAACAGTTTCCGGTCAATGAGCACTATTTTGGATTAGTCAATTTTGGGAATACCTGCTACTGCAATTCAGTTC
TTCAAGCACTTTATTTTTGTCGTCCATTTCGGGAAAAAGTTCTTGCGTATAAGAGTCAACCTAGGAAAAAGGAGAGCCTT
CTTACATGCTTAGCAGATCTCTTCCATAGCATAGCCACTCAGAAGAAAAAGGTTGGAGTAATACCCCCTAAGAAGTTCAT
CACAAGATTACGGAAAGAAAATGAGCTTTTTGACAACTACATGCAACAAGATGCCCATGAATTCTTAAATTACCTACTAA
ATACAATTGCTGATATTTTACAAGAAGAGAGAAAGCAGGAAAAACAAAATGGTCGCTTACCTAATGGTAATATTGATAAT
GAAAATAATAACAGCACACCAGACCCAACGTGGGTTCATGAGATTTTTCAGGGAACATTAACTAATGAAACCAGATGTCT
TACTTGTGAAACTATAAGCAGCAAAGATGAAGATTTTTTAGACCTTTCTGTTGACGTGGAACAAAATACATCAATTACTC
ACTGCTTAAGGGGTTTCAGCAACACAGAAACTCTGTGCAGTGAATACAAGTATTACTGTGAAGAGTGTCGCAGCAAACAG
GAAGCACACAAACGGATGAAAGTTAAAAAACTGCCCATGATTCTAGCTCTACACCTGAAGAGATTTAAATATATGGATCA
ACTTCATCGATATACAAAACTCTCTTACCGGGTAGTTTTTCCTTTAGAACTTCGTCTATTTAACACTTCAGGTGATGCCA
CCAATCCAGACAGAATGTACGACCTTGTTGCTGTTGTGGTTCACTGTGGAAGTGGTCCCAATCGAGGCCATTATATTGCA
ATAGTTAAGAGTCATGATTTTTGGTTGTTGTTTGATGACGACATTGTAGAAAAAATAGATGCACAAGCTATTGAAGAATT
CTACGGGTTGACATCAGATATCTCAAAGAACTCTGAGTCTGGTTACATCCTTTTCTATCAGTCTCGGGACTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 26 .59 RPM
SRP007412_cerebellum 22 .62 RPM
SRP007412_heart 13 .46 RPM
SRP007412_kidney 17 .57 RPM
SRP007412_liver 12 .36 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000019344 ortholog_one2one 5 retrogenes
retro_cjac_2734, retro_cjac_3901, retro_cjac_3964, retro_cjac_3965, retro_cjac_4011,
Homo sapiens ENSG00000152484 ortholog_one2one 4 retrogenes
retro_hsap_2328, retro_hsap_3266, retro_hsap_4726, retro_hsap_4918,
Microcebus murinus ENSMICG00000006269 ortholog_one2one 2 retrogenes
retro_mmur_1167, retro_mmur_1187,
Macaca mulatta ENSMMUG00000021425 possible_ortholog 1 retrogene
retro_mmul_937,
Nomascus leucogenys ENSNLEG00000000323 ortholog_one2one 3 retrogenes
retro_nleu_1817, retro_nleu_1995, retro_nleu_2426,
Otolemur garnettii ENSOGAG00000030639 ortholog_one2one 1 retrogene
retro_ogar_2897,
Pan troglodytes ENSPTRG00000005727 ortholog_one2one 3 retrogenes
retro_ptro_1701, retro_ptro_2209, retro_ptro_3143,
Tupaia belangeri ENSTBEG00000012960 ortholog_one2one 2 retrogenes
retro_tbel_3285, retro_tbel_4692,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_2110 71.14 79.46
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2. retro_pabe_2705 91.37 83.78
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3. retro_pabe_3672 93.30 100.00
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Download FASTA sequences of all ENSPPYG00000005232 retrocopies