Parental gene:

CCDC90B, ENSPPYG00000003736

Aliases:None
Description:coiled-coil domain containing 90B [Source:HGNC Symbol;Acc:28108]
Organism:Orangutan (Pongo abelii)
Coordinates:11:79034432..79059030(-)


>ENSPPYG00000003736
ATGAATAGTCGCCAGGCTTGGCGGCTCTTGCTCTCCCAAGGCAGAGGGGATCGTTGGGTTTCAAGGCCCCGCGGGCATTT
CTCGCCGGCCCTGCGGAGAGAGTTCTTCACTACCACAACCAAGGAGGGATATGATAGGCGGCCAGTGGATATAACTCCTC
TAGAACAAAGGAAATTAACTTTTGATACCCATGCATTGGTTCAGGACTTGGAAACTCACGGATTTGACAAATCACAAGCA
GAAACAATTGTGTCAGCGTTAACTACTTTATCAAATGTCAGCCTGGATACTATCTATAAAGAGATGGTCACTCAAGCTCA
ACAGGAAATAACAGTACAACAGCTAATGGCTCATTTGGATTCTATCAGGAAAGACATGGTCATCCTAGAGAAAAGTGAAT
TCGCAAATCTGAGAGCAGAAAATGAGAAAATGAAAATTGAATTAGACCAAATTAAGCAACAACTAATGCATGAAACCAGT
CGAATCAGAGCAGATAATAAACTGGATATCAACTTAGAAAGGAGCAGAGTAACAGATATGTTTACAGATCAAGAAAAGCA
ACTTATGGAAACAACTACAGAATTTACAAAAAAGGATACTCAAACCAAAAGTATTATTTCAGAGACCAGTAATAAAATTG
ACGCTGAAATTGCTTCCTTAAAAACACTGATGGAATCTAACAAACTTGAGACAATTCGTTATCTTGCAGCTTCGGTGTTT
ACTTGCCTGGCAATAGCATTGGGATTTTATAGATTCTGGAAGTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 12 .00 RPM
SRP007412_cerebellum 16 .78 RPM
SRP007412_heart 4 .43 RPM
SRP007412_kidney 7 .46 RPM
SRP007412_liver 7 .22 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000010541 ortholog_one2one 2 retrogenes
retro_chof_1396, retro_chof_780,
Callithrix jacchus ENSCJAG00000014547 ortholog_one2many 1 retrogene
retro_cjac_219,
Homo sapiens ENSG00000137500 ortholog_one2one 1 retrogene
retro_hsap_3050,
Macaca mulatta ENSMMUG00000020154 ortholog_one2one 2 retrogenes
retro_mmul_1880, retro_mmul_773,
Nomascus leucogenys ENSNLEG00000016478 ortholog_one2one 1 retrogene
retro_nleu_1644,
Ochotona princeps ENSOPRG00000004144 ortholog_one2one 2 retrogenes
retro_opri_197, retro_opri_682,
Pan troglodytes ENSPTRG00000004129 ortholog_one2one 1 retrogene
retro_ptro_1990,
Pteropus vampyrus ENSPVAG00000005459 ortholog_one2one 1 retrogene
retro_pvam_614,
Rattus norvegicus ENSRNOG00000009462 ortholog_one2one 1 retrogene
retro_rnor_868,
Tupaia belangeri ENSTBEG00000014665 ortholog_one2one 2 retrogenes
retro_tbel_3436, retro_tbel_4221,
Tarsius syrichta ENSTSYG00000011196 ortholog_one2one 1 retrogene
retro_tsyr_710,
Tursiops truncatus ENSTTRG00000003998 ortholog_one2one 1 retrogene
retro_ttru_445,
Vicugna pacos ENSVPAG00000007753 ortholog_one2one 1 retrogene
retro_vpac_366,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_2525 87.50 88.19
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Download FASTA sequences of all ENSPPYG00000003736 retrocopies