Parental gene:

CCDC90B, ENSMMUG00000020154

Aliases:None
Description:coiled-coil domain-containing protein 90B, mitochondrial [Source:RefSeq peptide;Acc:NP_001247740]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:14:81530462..81553403(-)


>ENSMMUG00000020154
ATGAATAGTCGCCAGGCTTGGCGGCTCTTGCTCTCCCAAGGCAGAGGGGATCGTTGGGTTTCAAGCCCCCGCGGGCATTT
CTCGCCGGCCCTGCGGAGAGACTTCTTCACCACCACAACCAAGGAGGGATATGATAGGCGGCCAGTGGATATAACTCCTT
TAGAACAAAGGAAATTAACTTTTGATACCCATGCATTGGTTCAGGACTTGGAAACTCATGGATTTGACAAAACACAAGCA
GAAACAATTGTATCAGCATTAACTACTTTATCAAATGTCAGCCTGGATACTATCTATAAAGAGATGGTCACTCAAGCTCA
ACAGGAAATAACAGTACAACAGCTAATGGCTCATTTGGATTCTATCAGGAAAGACATGGTCATCCTAGAGAAAAGTGAAT
TCGCAAATCTGAGAGCAGAGAATGAGAAAATGAAAATTGAATTAGACCAAGTTAAGCAACAACTAATGCATGAAACCAGT
CGAATCAGAGCAGATAATAAACTGGATATCAACCTAGAAAGGAGCAGAGTAACAGATATGTTTACAGATCAAGAAAAGCA
ACTTATGGAAACAACTACAGAATTTACAAAAAAGGATACTCAAACCAAAAGTATTATTTCAGAGACCAGTAATAAAATTG
ACGCTGAAATTGCTTCCTTGAAAACACTGATGGAGTCTAACAAACTTGAGACAATTCGTTATCTTGCAGCTTCGGTGTTT
ACTTGCCTGGCAATAGCATTGGGATTTTATAGATTCTGGAAGTAG

Library Parental gene expression (RPM)
SRP007412_brain 15 .91 RPM
SRP007412_brain_prefrontal_cortex 11 .42 RPM
SRP007412_cerebellum 18 .02 RPM
SRP007412_heart 8 .60 RPM
SRP007412_kidney 10 .09 RPM
SRP007412_liver 5 .34 RPM
SRP007412_testis 24 .46 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000010541 ortholog_one2one 2 retrogenes
retro_chof_1396, retro_chof_780,
Callithrix jacchus ENSCJAG00000014547 ortholog_one2many 1 retrogene
retro_cjac_219,
Homo sapiens ENSG00000137500 ortholog_one2one 1 retrogene
retro_hsap_3050,
Nomascus leucogenys ENSNLEG00000016478 ortholog_one2one 1 retrogene
retro_nleu_1644,
Ochotona princeps ENSOPRG00000004144 ortholog_one2one 2 retrogenes
retro_opri_197, retro_opri_682,
Pongo abelii ENSPPYG00000003736 ortholog_one2one 1 retrogene
retro_pabe_2525,
Pan troglodytes ENSPTRG00000004129 ortholog_one2one 1 retrogene
retro_ptro_1990,
Pteropus vampyrus ENSPVAG00000005459 ortholog_one2one 1 retrogene
retro_pvam_614,
Rattus norvegicus ENSRNOG00000009462 ortholog_one2one 1 retrogene
retro_rnor_868,
Tupaia belangeri ENSTBEG00000014665 ortholog_one2one 2 retrogenes
retro_tbel_3436, retro_tbel_4221,
Tarsius syrichta ENSTSYG00000011196 ortholog_one2one 1 retrogene
retro_tsyr_710,
Tursiops truncatus ENSTTRG00000003998 ortholog_one2one 1 retrogene
retro_ttru_445,
Vicugna pacos ENSVPAG00000007753 ortholog_one2one 1 retrogene
retro_vpac_366,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_773 82.22 88.19
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2. retro_mmul_1880 80.99 55.91
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Download FASTA sequences of all ENSMMUG00000020154 retrocopies