Parental gene:

PSMD4, ENSPPYG00000000871

Aliases:None
Description:proteasome (prosome, macropain) 26S subunit, non-ATPase, 4 [Source:HGNC Symbol;Acc:9561]
Organism:Orangutan (Pongo abelii)
Coordinates:1:100327377..100335598(-)


>ENSPPYG00000000871
ATGCGGAATGGAGACTTCTTACCCACCCGGCTGCAGGCCCAGCAGGATGCTGTCAACATAGTTTGTCATTCAAAGACCCG
CAGCAACCCTGAGAACAACGTGGGCCTTATCACACTGGCTAATGACTGTGAAGTGCTGACCACACTCACCCCAGACACTG
GCCGTATCCTGTCCAAGCTACATACTGTCCAACCCAAGGGCAAGATCACCTTCTGCACGGGCATCCGCGTGGCCCATCTG
GCTCTGAAGCACCGACAAGGCAAGAATCACAAGATGCGCATCATTGCCTTTGTGGGAAGCCCAGTGGAGGACAATGAAAA
GGATCTGGTGAAACTGGCTAAACGCCTCAAGAAGGAGAAAGTAAATGTTGACATTATCAATTTTGGGGAAGAGGAGGTGA
ACACAGAAAAGCTGACAGCCTTTGTAAACACGTTGAATGGCAAAGATGGAACCGGTTCTCATCTGGTGACAGTGCCTCCT
GGGCCCAGTTTGGCTGATGCTCTCATCAGTTCTCCGATTTTGGCTGGTGAAGGTGGTGCCATGCTGGGTCTTGGTGCCAG
TGACTTTGAATTTGGAGTAGATCCCAGTGCTGATCCTGAGCTGGCCTTGGCCCTTCGTGTATCTATGGAAGAGCAGCGGC
AGCGGCAGGAGGAGGAGGCCCGGCGGGCAGCTGCAGCTTCTGCTGCTGAGGCCGGGATTGCTACGACTGGGACTGAAGAC
TCAGACGATGCCCTGCTGAAGATGACCATCAGCCAGCAAGAGTTTGGCCGCACTGGGCTTCCTGACCTGAGCAGTATGAC
TGAGGAGGAGCAGATTGCTTATGCCATGCAGATGTCCCTGCAGGGAGCAGAGTTTGGCCAGGCGGAATCAGCAGACATTG
ATGCCAGCTCAGCCATGGACACATCTGAGCCAGCCAAGAGCTCAATTAACAGAGTTCTCAGCAGGCCCCTCCTCTATTTG
GAGGAGGATGATTACGACGTGATGCAGGACCCCGAGTTCCTTCAGAGTGTCCTAGAGAACCTCCCAGGTGTGGATCCCAA
CAATGAAGCCATTCGAAATGCTATGGGCTCCCTGGCCTCCCAGGCCACCAAGGACAGCAAGAAGGACAAGAAGGAGGAAG
ACAAGAACATCCAGAGGAATGCTTGTTGGTGTTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 156 .69 RPM
SRP007412_cerebellum 123 .79 RPM
SRP007412_heart 61 .80 RPM
SRP007412_kidney 97 .95 RPM
SRP007412_liver 91 .13 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000012565 ortholog_one2one 1 retrogene
retro_cfam_591,
Callithrix jacchus ENSCJAG00000007357 ortholog_one2one 1 retrogene
retro_cjac_2808,
Dasypus novemcinctus ENSDNOG00000007446 ortholog_one2one 1 retrogene
retro_dnov_1556,
Homo sapiens ENSG00000159352 ortholog_one2one 1 retrogene
retro_hsap_2531,
Nomascus leucogenys ENSNLEG00000010139 ortholog_one2one 1 retrogene
retro_nleu_1450,
Pan troglodytes ENSPTRG00000013893 ortholog_one2one 1 retrogene
retro_ptro_1474,
Sus scrofa ENSSSCG00000006628 ortholog_one2one 1 retrogene
retro_sscr_981,
Tupaia belangeri ENSTBEG00000016911 ortholog_one2one 1 retrogene
retro_tbel_238,
Tursiops truncatus ENSTTRG00000007019 ortholog_one2one 1 retrogene
retro_ttru_903,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_1862 86.61 91.03
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Download FASTA sequences of all ENSPPYG00000000871 retrocopies