Parental gene:

SUB1, ENSOPRG00000012887

Aliases:None
Description:SUB1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:19985]
Organism:Southern American pika (Ochotona princeps)
Coordinates:scaffold_5462:47105..54690(+)


>ENSOPRG00000012887
ATGCCGAAGTCAAAGGAACTTGTGTCTTCAAGCTCGTCTGGCAGCGATTCCGACAGTGAAGTGGACAAAAAGTTAAAGAG
GAAAAAGCAAGTCGCTCAGGAAAAGCCTGTGAAGAAACAGAAGACGGGCGAGACCTCCCGAGTCCTGTCCTCTCCCAAAC
AGAGCAGCAGCAGCAGAGACGACAACATGTTCCAGATTGGGAAAATGAGGTATGTCAGTGTTCGAGACTTTAAGGGGAAA
GTTCTGATTGATATTCGAGAATACTGGATGGATTCAGAAGGTGAAATGAAGCCAGGAAGAAAAGGCATTTCTCTAAATCC
AGAGCAGTGGAGCCAGCTGAAGGAACAGATTTCTGACATTGATGATGCAGTAAGGAAACTGTAA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006238 ortholog_one2one 2 retrogenes
retro_amel_1331, retro_amel_794,
Canis familiaris ENSCAFG00000018879 ortholog_one2one 5 retrogenes
retro_cfam_1266, retro_cfam_1536, retro_cfam_1916, retro_cfam_2010, retro_cfam_215,
Felis catus ENSFCAG00000006012 ortholog_one2one 2 retrogenes
retro_fcat_1052, retro_fcat_1313,
Gorilla gorilla ENSGGOG00000027033 ortholog_one2one 3 retrogenes
retro_ggor_1063, retro_ggor_1254, retro_ggor_2645,
Loxodonta africana ENSLAFG00000011006 possible_ortholog 1 retrogene
retro_lafr_19,
Macropus eugenii ENSMEUG00000007770 ortholog_one2one 4 retrogenes
retro_meug_1155, retro_meug_1820, retro_meug_2038, retro_meug_500,
Microcebus murinus ENSMICG00000014535 possible_ortholog 2 retrogenes
retro_mmur_1115, retro_mmur_17,
Myotis lucifugus ENSMLUG00000013685 possible_ortholog 6 retrogenes
retro_mluc_1649, retro_mluc_1696, retro_mluc_1785, retro_mluc_226, retro_mluc_2346, retro_mluc_621,
Monodelphis domestica ENSMODG00000020410 ortholog_one2one 3 retrogenes
retro_mdom_840, retro_mdom_841, retro_mdom_895,
Mustela putorius furo ENSMPUG00000015185 ortholog_one2many 2 retrogenes
retro_mputfur_186, retro_mputfur_295,
Mus musculus ENSMUSG00000022205 ortholog_one2one 4 retrogenes
retro_mmus_1118, retro_mmus_2304, retro_mmus_2586, retro_mmus_3606,
Oryctolagus cuniculus ENSOCUG00000006262 ortholog_one2one 5 retrogenes
retro_ocun_1227, retro_ocun_1313, retro_ocun_1661, retro_ocun_1714, retro_ocun_902,
Otolemur garnettii ENSOGAG00000009012 possible_ortholog 6 retrogenes
retro_ogar_1130, retro_ogar_1272, retro_ogar_218, retro_ogar_2481, retro_ogar_340, retro_ogar_525,
Pongo abelii ENSPPYG00000015379 possible_ortholog 2 retrogenes
retro_pabe_124, retro_pabe_1371,
Rattus norvegicus ENSRNOG00000050563 ortholog_one2one 12 retrogenes
retro_rnor_1040, retro_rnor_1137, retro_rnor_1203, retro_rnor_1496, retro_rnor_1692, retro_rnor_1693, retro_rnor_1863, retro_rnor_2721, retro_rnor_2986, retro_rnor_420, retro_rnor_572, retro_rnor_735,
Sarcophilus harrisii ENSSHAG00000014986 ortholog_one2one 1 retrogene
retro_shar_628,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_opri_495 65.38 59.84
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2. retro_opri_941 94.53 100.00
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Download FASTA sequences of all ENSOPRG00000012887 retrocopies