Parental gene:

SKP1, ENSOCUG00000022505

Aliases:None
Description:S-phase kinase-associated protein 1 [Source:HGNC Symbol;Acc:10899]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:3:16978328..16990936(-)


>ENSOCUG00000022505
ATGCCTTCAATAAAGTTGCAGAGTTCTGATGGAGAGATTTTTGAAGTTGATGTAGAAATTGCCAAACAGTCTGTGACTAT
CAAGACCATGTTGGAAGATTTGGGGATGGATGATGAAGGAGACGATGACCCGGTTCCTCTACCAAATGTTAATGCAGCAA
TATTAAAAAAGGTCATTCAGTGGTGCACCCACCACAAGGATGACCCTCCTCCCCCTGAAGACGATGAGAACAAAGAAAAG
CGAACGGATGATATCCCTGTTTGGGACCAGGAATTCCTGAAAGTTGACCAAGGAACACTTTTTGAGCTTATTCTGGCTGC
AAACTACTTAGACATCAAAGGTTTGCTGGACGTTACGTGCAAGACTGTTGCCAATATGATCAAGGGGAAGACTCCTGAGG
AGATTCGCAAGACCTTCAACATTAAGAATGACTTTACTGAAGAAGAGGAAGCCCAGGTACGCAAAGAGAACCAGTGGTGT
GAAGAGAAGTGA

Library Parental gene expression (RPM)
SRP017611_brain 217 .39 RPM
SRP017611_kidney 136 .83 RPM
SRP017611_liver 40 .62 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017810 ortholog_one2one 1 retrogene
retro_amel_897,
Canis familiaris ENSCAFG00000000994 ortholog_one2one 5 retrogenes
retro_cfam_1613, retro_cfam_779, retro_cfam_813, retro_cfam_889, retro_cfam_965,
Callithrix jacchus ENSCJAG00000013613 possible_ortholog 1 retrogene
retro_cjac_112,
Dasypus novemcinctus ENSDNOG00000012999 ortholog_one2one 9 retrogenes
retro_dnov_1216, retro_dnov_1338, retro_dnov_2433, retro_dnov_2526, retro_dnov_2647, retro_dnov_281, retro_dnov_286, retro_dnov_389, retro_dnov_776,
Echinops telfairi ENSETEG00000007560 possible_ortholog 5 retrogenes
retro_etel_1730, retro_etel_515, retro_etel_758, retro_etel_762, retro_etel_811,
Felis catus ENSFCAG00000031140 ortholog_one2one 1 retrogene
retro_fcat_653,
Gorilla gorilla ENSGGOG00000022930 possible_ortholog 7 retrogenes
retro_ggor_1288, retro_ggor_1300, retro_ggor_2601, retro_ggor_2602, retro_ggor_2796, retro_ggor_2797, retro_ggor_778,
Microcebus murinus ENSMICG00000017588 possible_ortholog 3 retrogenes
retro_mmur_270, retro_mmur_803, retro_mmur_997,
Myotis lucifugus ENSMLUG00000022919 ortholog_one2one 13 retrogenes
retro_mluc_1455, retro_mluc_1738, retro_mluc_1895, retro_mluc_2009, retro_mluc_2260, retro_mluc_2261, retro_mluc_2520, retro_mluc_2527, retro_mluc_2557, retro_mluc_267, retro_mluc_383, retro_mluc_841, retro_mluc_944,
Monodelphis domestica ENSMODG00000014168 possible_ortholog 4 retrogenes
retro_mdom_1173, retro_mdom_155, retro_mdom_1648, retro_mdom_929,
Pongo abelii ENSPPYG00000015783 possible_ortholog 7 retrogenes
retro_pabe_1915, retro_pabe_199, retro_pabe_2072, retro_pabe_2736, retro_pabe_2756, retro_pabe_626, retro_pabe_824,
Vicugna pacos ENSVPAG00000001583 ortholog_one2one 1 retrogene
retro_vpac_279,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_397 96.93 100.00
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2. retro_ocun_448 76.54 98.16
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3. retro_ocun_553 63.64 79.14
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4. retro_ocun_1119 62.89 94.48
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5. retro_ocun_1228 92.95 95.71
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6. retro_ocun_1242 52.73 66.87
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7. retro_ocun_1420 91.67 87.73
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8. retro_ocun_1453 62.39 64.42
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9. retro_ocun_1572 90.12 99.39
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10. retro_ocun_1784 99.39 100.00
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Download FASTA sequences of all ENSOCUG00000022505 retrocopies