Parental gene:

SKP1, ENSFCAG00000031140

Aliases:None
Description:S-phase kinase-associated protein 1 [Source:HGNC Symbol;Acc:10899]
Organism:Cat (Felis catus)
Coordinates:A1:111679394..111691779(-)


>ENSFCAG00000031140
ATGCCTTCAATTAAGTTGCAGAGTTCTGATGGAGAGATATTTGAAGTTGATGTTGAAATTGCCAAACAGTCTGTGACTAT
CAAGACCATGTTGGAAGATTTGGGAATGGATGACGAAGGAGATGATGACCCAGTTCCTCTACCAAATGTTAATGCAGCAA
TATTAAAAAAGGTCATTCAATGGTGCACCCACCACAAGGATGACCCCCCTCCTCCTGAGGATGATGAGAACAAAGAAAAG
CGAACAGATGATATCCCTGTTTGGGACCAAGAATTCCTGAAAGTTGACCAAGGAACACTTTTTGAACTTATTCTGGCTGC
GAACTACTTAGACATTAAAGGTTTGCTTGATGTTACATGCAAGACTGTTGCCAATATGATCAAGGGGAAAACTCCTGAGG
AGATTCGCAAGACCTTCAATATCAAAAATGATTTTACTGAAGAAGAGGAAGCCCAGGTACGCAAAGAGAACCAGTGGTGT
GAAGAGAAGTGA

Library Parental gene expression (RPM)
SRP017611_brain 156 .55 RPM
SRP017611_kidney 93 .06 RPM
SRP017611_liver 37 .20 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017810 ortholog_one2one 1 retrogene
retro_amel_897,
Canis familiaris ENSCAFG00000000994 ortholog_one2many 5 retrogenes
retro_cfam_1613, retro_cfam_779, retro_cfam_813, retro_cfam_889, retro_cfam_965,
Callithrix jacchus ENSCJAG00000013613 possible_ortholog 1 retrogene
retro_cjac_112,
Dasypus novemcinctus ENSDNOG00000012999 ortholog_one2one 9 retrogenes
retro_dnov_1216, retro_dnov_1338, retro_dnov_2433, retro_dnov_2526, retro_dnov_2647, retro_dnov_281, retro_dnov_286, retro_dnov_389, retro_dnov_776,
Echinops telfairi ENSETEG00000007560 possible_ortholog 5 retrogenes
retro_etel_1730, retro_etel_515, retro_etel_758, retro_etel_762, retro_etel_811,
Gorilla gorilla ENSGGOG00000022930 possible_ortholog 7 retrogenes
retro_ggor_1288, retro_ggor_1300, retro_ggor_2601, retro_ggor_2602, retro_ggor_2796, retro_ggor_2797, retro_ggor_778,
Latimeria chalumnae ENSLACG00000016599 possible_ortholog 1 retrogene
retro_lcha_103,
Microcebus murinus ENSMICG00000017588 possible_ortholog 3 retrogenes
retro_mmur_270, retro_mmur_803, retro_mmur_997,
Myotis lucifugus ENSMLUG00000022919 ortholog_one2one 13 retrogenes
retro_mluc_1455, retro_mluc_1738, retro_mluc_1895, retro_mluc_2009, retro_mluc_2260, retro_mluc_2261, retro_mluc_2520, retro_mluc_2527, retro_mluc_2557, retro_mluc_267, retro_mluc_383, retro_mluc_841, retro_mluc_944,
Monodelphis domestica ENSMODG00000014168 possible_ortholog 4 retrogenes
retro_mdom_1173, retro_mdom_155, retro_mdom_1648, retro_mdom_929,
Oryctolagus cuniculus ENSOCUG00000022505 ortholog_one2one 10 retrogenes
retro_ocun_1119, retro_ocun_1228, retro_ocun_1242, retro_ocun_1420, retro_ocun_1453, retro_ocun_1572, retro_ocun_1784, retro_ocun_397, retro_ocun_448, retro_ocun_553,
Pongo abelii ENSPPYG00000015783 possible_ortholog 7 retrogenes
retro_pabe_1915, retro_pabe_199, retro_pabe_2072, retro_pabe_2736, retro_pabe_2756, retro_pabe_626, retro_pabe_824,
Vicugna pacos ENSVPAG00000001583 ortholog_one2one 1 retrogene
retro_vpac_279,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_653 83.13 100.00
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Download FASTA sequences of all ENSFCAG00000031140 retrocopies