Parental gene:

PDCL3, ENSNLEG00000014393

Aliases:None
Description:None
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397368.1:2279294..2293431(+)


>ENSNLEG00000014393
ATGCAGGACCCCAACGCAGACACTGAGTGGAATGACATCTTACGCAAAAAGGGTATCTTACCCCCCAAGGAAAGTCTGAA
AGAATTGGAAGAGGAGGCAGAAGAGGAGCAGCGCATCCTCCAGCAGTCAGTGGTGAAAACATATGAAGATATGACTTTGG
AAGAGCTGGAGGATCATGAAGACGAGTTTAATGAGGAGGATGAACGTGCTATTGAAATGTACAGACGGCAGAGACTGGCT
GAGTGGAAAGCAACTAAACTGAAGAATAAATTTGGAGAAGTTTTGGAGATCTCAGGGAAGGATTATGTTCAAGAAGTTAC
CAAAGCTGGCGAGGGCTTGTGGGTCATCTTGCACCTTTACAAACAAGGAATTCCCCTCTGTGCCCTGATAAATCAGCACC
TCAGTGGACTTGCCAGGAAGTTTCCTGATGTCAAATTTATCAAAGCCATTTCAACAACCTGCATACCCAATTATCCTGAT
AGGAATCTGCCCACGATATTTGTTTACCTGGAAGGAGATATCAAGGCTCAGTTTATTGGTCCTCTGGTGTTTGGCGGCAT
GAACCTGACAAGAGATGAGTTGGAATGGAAACTGTCTGAATCTGGAGCAATTATGACGGACCTGGAGGAAAACCCTAAGA
AGCCGATTGAAGACGTGTTGCTGTCGTCAGTGCGGCGCTCTGTCCTCATGAGGAGGCACAGCGATTCCGAGGGTGACTGA

Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000002226 ortholog_one2one 1 retrogene
retro_cfam_1740,
Callithrix jacchus ENSCJAG00000010160 ortholog_one2one 3 retrogenes
retro_cjac_1486, retro_cjac_1599, retro_cjac_2055,
Dipodomys ordii ENSDORG00000012397 ortholog_one2one 1 retrogene
retro_dord_702,
Erinaceus europaeus ENSEEUG00000000224 ortholog_one2one 1 retrogene
retro_eeur_506,
Homo sapiens ENSG00000115539 ortholog_one2one 7 retrogenes
retro_hsap_1132, retro_hsap_151, retro_hsap_2684, retro_hsap_2757, retro_hsap_3535, retro_hsap_3961, retro_hsap_4102,
Myotis lucifugus ENSMLUG00000016446 ortholog_one2one 1 retrogene
retro_mluc_1443,
Monodelphis domestica ENSMODG00000001489 ortholog_one2one 1 retrogene
retro_mdom_734,
Mus musculus ENSMUSG00000026078 ortholog_one2one 1 retrogene
retro_mmus_2284,
Oryctolagus cuniculus ENSOCUG00000001469 ortholog_one2one 2 retrogenes
retro_ocun_1035, retro_ocun_920,
Otolemur garnettii ENSOGAG00000015138 ortholog_one2one 2 retrogenes
retro_ogar_1147, retro_ogar_2959,
Ochotona princeps ENSOPRG00000011600 ortholog_one2one 2 retrogenes
retro_opri_1070, retro_opri_289,
Tursiops truncatus ENSTTRG00000006242 ortholog_one2one 1 retrogene
retro_ttru_1184,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_nleu_538 80.00 53.56
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2. retro_nleu_571 87.87 100.00
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3. retro_nleu_778 94.14 100.00
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4. retro_nleu_926 87.31 82.01
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5. retro_nleu_1499 86.57 56.07
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6. retro_nleu_1575 84.65 100.00
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7. retro_nleu_2741 90.04 100.00
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8. retro_nleu_2891 95.83 100.00
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Download FASTA sequences of all ENSNLEG00000014393 retrocopies