Parental gene:

Gnpda1, ENSMUSG00000052102

Aliases:Gnpda1, GNPDA, Gnp1, Gnpi, oscillin
Description:glucosamine-6-phosphate deaminase 1 [Source:MGI Symbol;Acc:MGI:1347054]
Organism:Mouse (Mus musculus)
Coordinates:18:38327557..38339003(-)


>ENSMUSG00000052102
ATGAAGCTCATTATCCTGGAACACTATTCCCAGGCCAGTGAGTGGGCGGCCAAGTATATTAGGAACCGTATCATCCAGTT
TAACCCAGGGCCTGACAAGTACTTCACCCTGGGGCTCCCCACTGGGAGCACCCCGCTTGGCTGCTACCAGAAGCTGATCG
AGTACTATAAGAATGGGGACCTGTCCTTTCAATATGTGAAAACCTTCAACATGGACGAGTATGTGGGTCTTCCTCGAGAC
CACCCAGAGAGTTACCACTCCTTCATGTGGAATAATTTCTTCAAGCACATTGACATCCACCCTGAAAACACCCACATTTT
GGATGGAAATGCGGCTGACCTGCAGGCCGAGTGTGACGCCTTTGAGGAGAAGATCCAGGCTGCCGGAGGGATCGAACTCT
TTGTCGGAGGCATTGGCCCCGATGGACACATTGCCTTCAATGAGCCAGGCTCCAGCCTGGTGTCCAGGACCCGTGTGAAG
ACTCTGGCTATGGACACCATCCTGGCCAACGCTAGGTTCTTTGATGGTGATCTTGCCAAGGTGCCCACCATGGCCCTGAC
AGTGGGGGTCGGCACTGTCATGGATGCTAAAGAGGTGATGATCCTCATCACAGGCGCTCACAAGGCCTTTGCTCTGTACA
AAGCCATCGAGGAGGGCGTGAACCACATGTGGACGGTGTCCGCCTTTCAGCAGCACCCCCGCACTGTGTTTGTGTGTGAC
GAGGACGCCACCTTGGAACTAAAAGTGAAGACAGTCAAATATTTCAAAGGTTTAATGCTTGTTCATAACAAGCTGGTGGA
CCCCCTGTACAGTATCAAGGAGAAGGAAATTCAGAAAAGCCAATCTGCGAAGAAGCCATACAGTGACTAG

Library Parental gene expression (RPM)
SRP007412_brain 9 .18 RPM
SRP007412_cerebellum 4 .73 RPM
SRP007412_heart 7 .75 RPM
SRP007412_kidney 31 .97 RPM
SRP007412_liver 7 .62 RPM
SRP007412_testis 6 .86 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000007865 ortholog_one2one 1 retrogene
retro_btau_535,
Choloepus hoffmanni ENSCHOG00000009884 ortholog_one2many 2 retrogenes
retro_chof_2278, retro_chof_42,
Dasypus novemcinctus ENSDNOG00000007804 ortholog_one2one 3 retrogenes
retro_dnov_1363, retro_dnov_1608, retro_dnov_508,
Macropus eugenii ENSMEUG00000015442 ortholog_one2one 1 retrogene
retro_meug_655,
Monodelphis domestica ENSMODG00000010398 ortholog_one2many 1 retrogene
retro_mdom_1337,
Otolemur garnettii ENSOGAG00000007303 ortholog_one2one 3 retrogenes
retro_ogar_2251, retro_ogar_2506, retro_ogar_446,
Ictidomys tridecemlineatus ENSSTOG00000016508 ortholog_one2one 1 retrogene
retro_itri_1135,
Tupaia belangeri ENSTBEG00000003330 ortholog_one2one 2 retrogenes
retro_tbel_2431, retro_tbel_59,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_2711 99.20 86.85
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Download FASTA sequences of all ENSMUSG00000052102 retrocopies