Parental gene:

GNPDA1, ENSBTAG00000007865

Aliases:GNPDA1, GNPI
Description:Glucosamine-6-phosphate isomerase 1 [Source:UniProtKB/Swiss-Prot;Acc:A4FV08]
Organism:Cow (Bos taurus)
Coordinates:7:54748004..54759289(-)


>ENSBTAG00000007865
ATGAAGCTCATCATCCTGGACCACTATTCTCAGGCCAGTGAGTGGGCGGCCAAATACATCAGGAACCGCATCATCCAGTT
TAACCCAGGGCCAGACAAGTACTTCACCCTGGGGCTCCCTACTGGGAGCACCCCACTTGGCTGCTACAAGAAACTGATTG
AATACTATAAGAATGGAGACCTGTCCTTCAAATATGTGAAGACTTTCAACATGGATGAGTATGTGGGCCTTCCTCGAGAC
CACCCAGAGAGCTACCACTCCTTCATGTGGAACAACTTCTTCAAGCACATTGACATCCACCCAGAAAACACTCACATCCT
GGATGGGAATGCAGCTGACCTGCAGGCTGAGTGTGATGCCTTTGAAGAGAAGATCAAGGCTGCGGGCGGGATTGAGCTAT
TTGTTGGAGGCATCGGCCCTGACGGACACATTGCCTTCAACGAGCCGGGCTCCAGTCTGGTATCTAGGACCCGTGTGAAG
ACGCTGGCCATGGACACCATCCTAGCCAATGCTAGGTTCTTCGATGGAGATCTTGCCAAGGTGCCCACTATGGCCCTGAC
GGTGGGCGTGGGCACTGTCATGGATGCTAGAGAGGTGATGATCCTCATCACAGGTGCTCACAAGGCGTTTGCTCTGTACA
AGGCCATCGAGGAAGGAGTGAACCACATGTGGACCGTGTCTGCCTTCCAGCAGCATCCCCGCACAGTGTTTGTGTGCGAC
GAGGACGCTACCCTGGAGTTGAAAGTGAAGACTGTCAAGTATTTCAAAGGTTTAATGCTTGTTCATAACAAATTGGTGGA
CCCCTTGTACAGTATCAAAGAGAAAGAAATAGAGAAAAGCCAGTCTTCTAAGAAACCATACAGTGATTAG

Library Parental gene expression (RPM)
ERP005899_liver 12 .98 RPM
ERP005899_muscle 32 .04 RPM
SRP017611_brain 10 .10 RPM
SRP017611_kidney 68 .99 RPM
SRP017611_liver 10 .27 RPM
SRP030211_testis 13 .31 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000009884 ortholog_one2many 2 retrogenes
retro_chof_2278, retro_chof_42,
Dasypus novemcinctus ENSDNOG00000007804 ortholog_one2one 3 retrogenes
retro_dnov_1363, retro_dnov_1608, retro_dnov_508,
Macropus eugenii ENSMEUG00000015442 ortholog_one2one 1 retrogene
retro_meug_655,
Monodelphis domestica ENSMODG00000010398 ortholog_one2many 1 retrogene
retro_mdom_1337,
Mus musculus ENSMUSG00000052102 ortholog_one2one 1 retrogene
retro_mmus_2711,
Otolemur garnettii ENSOGAG00000007303 ortholog_one2one 3 retrogenes
retro_ogar_2251, retro_ogar_2506, retro_ogar_446,
Ictidomys tridecemlineatus ENSSTOG00000016508 ortholog_one2one 1 retrogene
retro_itri_1135,
Tupaia belangeri ENSTBEG00000003330 ortholog_one2one 2 retrogenes
retro_tbel_2431, retro_tbel_59,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_535 78.06 66.44
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Download FASTA sequences of all ENSBTAG00000007865 retrocopies