Parental gene:

Tardbp, ENSMUSG00000041459

Aliases:Tardbp, 1190002A23Rik, C85084, TDP-43, Tdp43
Description:TAR DNA binding protein [Source:MGI Symbol;Acc:MGI:2387629]
Organism:Mouse (Mus musculus)
Coordinates:4:148612381..148627019(-)


>ENSMUSG00000041459
ATGTCTGAATATATTCGGGTAACAGAAGATGAGAACGATGAACCCATTGAAATACCATCAGAAGACGATGGGACGGTGTT
GCTGTCCACAGTTACAGCCCAGTTTCCAGGGGCATGCGGCCTGCGCTACCGGAATCCCGTGTCTCAGTGTATGAGAGGAG
TCCGACTGGTGGAAGGAATTCTGCATGCCCCAGATGCTGGCTGGGGCAATCTGGTATATGTTGTCAACTATCCCAAAGAT
AACAAAAGGAAAATGGATGAGACAGATGCTTCCTCTGCAGTGAAAGTGAAAAGAGCAGTCCAGAAAACATCTGACCTCAT
AGTGTTGGGTCTCCCCTGGAAAACAACTGAGCAGGATCTGAAAGACTATTTCAGTACTTTTGGAGAGGTTCTTATGGTTC
AGGTCAAGAAAGATCTTAAAACTGGTCACTCGAAAGGGTTTGGCTTTGTTCGATTTACAGAATATGAAACCCAAGTGAAA
GTAATGTCACAACGACATATGATAGATGGGCGATGGTGTGACTGTAAACTTCCCAACTCTAAGCAAAGCCCAGACGAGCC
TTTGAGAAGCAGAAAGGTGTTTGTTGGACGTTGTACAGAGGACATGACTGCTGAAGAGCTTCAGCAGTTTTTCTGTCAGT
ATGGAGAAGTGGTAGATGTCTTCATTCCCAAACCATTCAGAGCTTTTGCCTTCGTCACCTTTGCAGATGATAAGGTTGCC
CAGTCTCTTTGTGGAGAGGATTTGATCATTAAAGGAATCAGCGTGCATATATCCAATGCTGAACCTAAGCATAATAGCAA
TAGACAGTTAGAAAGAAGTGGAAGATTTGGTGGTAATCCAGGTGGCTTTGGGAATCAGGGTGGGTTTGGTAACAGTAGAG
GGGGTGGAGCTGGCTTGGGAAATAACCAGGGTGGTAATATGGGTGGAGGGATGAACTTTGGTGCTTTTAGCATTAACCCA
GCGATGATGGCTGCGGCTCAGGCAGCGTTGCAGAGCAGTTGGGGTATGATGGGCATGTTAGCCAGCCAGCAGAACCAGTC
GGGCCCATCTGGGAATAACCAAAGCCAGGGCAGCATGCAGAGGGAACCAAATCAGGCTTTTGGTTCTGGAAATAATTCCT
ACAGTGGTTCTAATTCTGGTGCCCCCCTTGGTTGGGGGTCAGCATCAAATGCAGGATCGGGCAGTGGTTTTAATGGGGGC
TTTGGCTCGAGCATGGATTCTAAGTCTTCTGGCTGGGGAATGTAG

Library Parental gene expression (RPM)
SRP007412_brain 146 .56 RPM
SRP007412_cerebellum 188 .10 RPM
SRP007412_heart 74 .34 RPM
SRP007412_kidney 141 .52 RPM
SRP007412_liver 73 .54 RPM
SRP007412_testis 99 .39 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000002381 ortholog_one2one 2 retrogenes
retro_cjac_2457, retro_cjac_525,
Dasypus novemcinctus ENSDNOG00000008531 ortholog_one2one 1 retrogene
retro_dnov_2262,
Homo sapiens ENSG00000120948 ortholog_one2one 2 retrogenes
retro_hsap_1209, retro_hsap_3637,
Macaca mulatta ENSMMUG00000007456 ortholog_one2many 1 retrogene
retro_mmul_1847,
Nomascus leucogenys ENSNLEG00000009512 possible_ortholog 2 retrogenes
retro_nleu_201, retro_nleu_819,
Pongo abelii ENSPPYG00000001894 ortholog_one2many 1 retrogene
retro_pabe_1008,
Pan troglodytes ENSPTRG00000000136 ortholog_one2one 2 retrogenes
retro_ptro_2460, retro_ptro_828,
Sus scrofa ENSSSCG00000023126 possible_ortholog 1 retrogene
retro_sscr_652,
Drosophila melanogaster FBgn0025790 possible_ortholog 1 retrogene
retro_dmel_17,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_1958 89.84 86.44
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Download FASTA sequences of all ENSMUSG00000041459 retrocopies