Parental gene:

TARDBP, ENSDNOG00000008531

Aliases:None
Description:TAR DNA binding protein [Source:HGNC Symbol;Acc:11571]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:scaffold_16006:17451..21929(-)


>ENSDNOG00000008531
ATGTCTGAATATATTCGAGTAACCGAAGATGAGAATGATGAGCCTATTGAAATACCATCAGAAGATGATGGGACTGTGTT
GCTGTCCACGGTTACGGCCCAGTTTCCAGGAGCATGTGGTCTGCGCTACAGGAATCCAGTATCTCAGTGTATGAGAGGTG
TCCGGCTAGTAGAAGGAGTTCTGCATGCACCTGATGCCGGCTGGGGAAATCTGGTGTATGTTGTCAACTATCCCAAAGAT
AACAAAAGAAAAATGGATGAAACTGATGCTTCATCAGCAGTGAAAGTGAAAAGAGCAGTTCAGAAGACGTCCGATTTAAT
AGTGTTGGGCCTGCCATGGAAAACAACTGAACAGGATCTAAAAGAATATTTTAGTACCTTTGGAGAAGTTCTTATGGTGC
AGGTCAAGAAAGATATTAAAACTGGTCATTCAAAAGGGTTTGGTTTTGTTCGTTTTACGGAATATGAAACCCAGGTGAAA
GTAATGTCACAGCGACATATGATAGATGGACGGTGGTGTGACTGTAAACTTCCTAATTCTAAGCAAAGCCCAGATGAGCC
TTTGAGGAGCAGGAAGGTGTTCGTTGGGCGTTGTACAGAGGACATGACTGCTGATGAGTTGCAGCAGTTCTTTTGCCAAT
ACGGAGAAGTGGTAGACGTCTTCATTCCCAAACCATTCAGGGCTTTTGCCTTTGTTACATTTGCAGATGATCAGGTTGCC
CAGTCTCTTTGTGGAGAGGACTTGATCATTAAAGGAATCAGCGTACATATATCCAATGCTGAACCTAAGCACAATAGCAA
TAGACAGTTAGAAAGAAGTGGAAGATTTGGTGGTAATCCAGGTGGCTTTGGGAATCAGGGTGGATTTGGTAATAATAGAG
GGGGTGGAGCTGGCTTGGGAAACAATCAAGGTAGTAATATGGGTGGAGGGATGAATTTTGGTGCTTTCAGCATTAATCCA
GCAATGATGGCTGCAGCCCAAGCAGCTTTGCAGAGCAGCTGGGGTATGATGGGAATGTTAGCCAGTCAGCAGAACCAGTC
AGGCCCATCAGGTAATAACCAAAGCCAAGGCAACATGCAGAGGGAGCCAAATCAGGCCTTTGGTTCTGGAAGTAACTCCT
ACAGTGGCTCTAATTCTGGTGCAGCAATTGGTTGGGGATCAGCATCAAATGCAGGATCAGGCAGTGGTTTTAATGGAGGC
TTTGGCTCAAGCATGGATTCCAAATCTTCCGGCTGGGGAATGTAG

Library Parental gene expression (RPM)
SRP012922_ascending_colon 70 .79 RPM
SRP012922_cerebellum 83 .31 RPM
SRP012922_heart 35 .27 RPM
SRP012922_kidney 34 .22 RPM
SRP012922_liver 31 .27 RPM
SRP012922_lung 52 .08 RPM
SRP012922_quadricep_muscle 35 .14 RPM
SRP012922_spleen 72 .11 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000002381 ortholog_one2one 2 retrogenes
retro_cjac_2457, retro_cjac_525,
Dasypus novemcinctus ENSDNOG00000014501 within_species_paralog 1 retrogene
retro_dnov_1423,
Homo sapiens ENSG00000120948 ortholog_one2one 2 retrogenes
retro_hsap_1209, retro_hsap_3637,
Macaca mulatta ENSMMUG00000007456 ortholog_one2many 1 retrogene
retro_mmul_1847,
Mus musculus ENSMUSG00000041459 ortholog_one2one 1 retrogene
retro_mmus_1958,
Nomascus leucogenys ENSNLEG00000009512 possible_ortholog 2 retrogenes
retro_nleu_201, retro_nleu_819,
Pongo abelii ENSPPYG00000001894 ortholog_one2many 1 retrogene
retro_pabe_1008,
Pan troglodytes ENSPTRG00000000136 ortholog_one2one 2 retrogenes
retro_ptro_2460, retro_ptro_828,
Sus scrofa ENSSSCG00000023126 possible_ortholog 1 retrogene
retro_sscr_652,
Drosophila melanogaster FBgn0025790 possible_ortholog 1 retrogene
retro_dmel_17,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_2262 75.00 57.25
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Download FASTA sequences of all ENSDNOG00000008531 retrocopies