Parental gene:

Hax1, ENSMUSG00000027944

Aliases:Hax1, HAX-1, HSP1BP-1, Hs1bp1, SIG-111, Silg111, mHAX-1s
Description:HCLS1 associated X-1 [Source:MGI Symbol;Acc:MGI:1346319]
Organism:Mouse (Mus musculus)
Coordinates:3:89995456..89998686(-)


>ENSMUSG00000027944
ATGAGCGTCTTTGATCTTTTCCGAGGCTTTTTCGGCTTTCCTGGACCTCGGAGCCACAGAGATCCTTTTTTTGGAGGGAT
GACTCGAGATGATGACGACGATGATGATGATGATGACGAAGCGGAGGAAGACAGAGGCGCGTGGGGTCGAGAGAGCTATG
CGTTTGATGGTTCTCAGCCTCCAGAGGAATTCGGTTTCAGCTTCAGCCCCAGGGGAGGGATGCGATTCCACGGCAACTTT
GGCTTTGATGATCTAGTACGAGATTTTAATAGCATCTTCAGCGAGATGGGGGCCTGGACCTTGCCTTCCCACTCTCCTGA
ACTTCCAGGTCCTGAGTCAGAAACACCTGGTGAGAGACTGCGGGAGGGGCAGACACTACGAGACTCAATGCTTAAGTACC
CAGATAGTCACCAACCCAGGATCTTTGAGGGGGTCTTGGAGAGTCATGCAAAACCTGAATCCCCAAAACCAGCTCCAGAT
TGGGGGTCGCAGGGACCTTTTCATAGGTTGGATGATACATGGCCTGTGAGTCCCCATTCTAGAGCCAAAGAGGACAAAGA
TCTTGACTCCCAGGTTTCCCAGGAAGGTCTGGGTCCACTTCTTCAACCCCAGCCCAAATCGTATTTCAAAAGTATCTCTG
TGACCAAGATCACTAAGCCAGATGGGACAGTGGAGGAACGCCGCACTGTGGTAGACAGTGAGGGCCGGAGGGAGACCACA
GTGACCCATCAAGAAGCCCATGACAGTTCCAGAAGTGATCCAGACTCTCAGAGATCTTCAGCTTTGGATGATCCCTTTTC
CATTCTGGATTTGCTACTAGGACGTTGGTTTCGGTCCCGATAG

Library Parental gene expression (RPM)
SRP007412_brain 12 .08 RPM
SRP007412_cerebellum 15 .68 RPM
SRP007412_heart 10 .09 RPM
SRP007412_kidney 31 .34 RPM
SRP007412_liver 25 .31 RPM
SRP007412_testis 41 .94 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000009660 ortholog_one2one 1 retrogene
retro_cjac_1888,
Dasypus novemcinctus ENSDNOG00000016727 ortholog_one2one 1 retrogene
retro_dnov_1537,
Dipodomys ordii ENSDORG00000012587 ortholog_one2one 1 retrogene
retro_dord_769,
Homo sapiens ENSG00000143575 ortholog_one2one 1 retrogene
retro_hsap_4912,
Microcebus murinus ENSMICG00000010414 ortholog_one2one 2 retrogenes
retro_mmur_1118, retro_mmur_1284,
Monodelphis domestica ENSMODG00000017215 ortholog_one2one 1 retrogene
retro_mdom_433,
Nomascus leucogenys ENSNLEG00000011290 ortholog_one2one 1 retrogene
retro_nleu_2286,
Pan troglodytes ENSPTRG00000001380 ortholog_one2one 1 retrogene
retro_ptro_3275,
Rattus norvegicus ENSRNOG00000045647 ortholog_one2many 1 retrogene
retro_rnor_736,
Tupaia belangeri ENSTBEG00000014445 ortholog_one2one 1 retrogene
retro_tbel_930,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_353 81.49 99.64
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2. retro_mmus_1306 72.62 58.93
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3. retro_mmus_2000 93.95 100.00
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Download FASTA sequences of all ENSMUSG00000027944 retrocopies