Parental gene:

Ewsr1, ENSMUSG00000009079

Aliases:Ewsr1, Ews, Ewsh
Description:Ewing sarcoma breakpoint region 1 [Source:MGI Symbol;Acc:MGI:99960]
Organism:Mouse (Mus musculus)
Coordinates:11:5069688..5099266(-)


>ENSMUSG00000009079
ATGGCGTCCACGGATTACAGTACCTATAGTCAAGCTGCAGCCCAGCAGGGCTACAGTGCTTACACCGCCCAGCCAACTCA
AGGATATGCACAGACCACCCAGGCATATGGGCAACAAAGCTATGGAACCTATGGACAGCCTACTGATGTCAGCTATACTC
AGGCTCAGACCACTGCCACCTACGGGCAGACTGCATATGCAACTTCTTACGGACAGCCTCCCACTGGTTATAGCACTCCA
ACTGCCCCGCAGGCGTACAGCCAGCCTGTGCAGGGATATGGCACTGGGACTTATGACAGCACCACTGCTACAGTCACCAC
AACGCAGGCCTCTTACGCAGCTCAGACTGCATATGGCACCCAGCCTGCCTACCCCACCTATGGCCAGCAGCCAACAGCCA
CCGCACCTACCAGACCACAGGATGGTAACAAGCCTGCTGAGACTAGTCAACCTCAATCTAGCACAGGGGGTTATAACCAA
CCCAGCCTAGGATATGGACAGAGTAACTACAGCTATCCCCAGGTACCTGGGAGCTACCCAATGCAGCCAGTCACCGCACC
TCCATCTTATCCTCCTACCAGCTACTCCTCTTCACAGCCGACTAGTTACGATCAGAGCAGTTACTCTCAGCAGAACACCT
ATGGGCAGCCGAGCAGCTATGGACAACAGAGTAGCTATGGTCAACAAAGCAGCTATGGGCAGCAGCCTCCTACTAGTTAC
CCCCCTCAGACTGGATCCTACAGCCAGGCTCCAAGTCAATATAGCCAACAGAGCAGCAGCTACGGGCAGCAGAGTTCATT
CCGACAGGACCACCCCAGTAGCATGGGTGTTTATGGGCAGGAGTCTGGAGGATTTTCCGGACCAGGAGAGAACCGGAGCT
TGAGTGGCCCTGATAACCGGGGCAGGGGAAGAGGGGGATTTGATCGTGGAGGCATGAGCAGAGGTGGGCGGGGAGGAGGA
CGCGGTGGACTGGGCGCTGGAGAGCGAGGTGGCTTCAATAAGCCTGGTGGACCCATGGATGAAGGACCAGATCTTGATCT
AGGCCTTCCTATAGATCCCGATGAAGACTCTGACAACAGTGCAATTTATGTGCAAGGATTAAATGACAATGTGACTCTGG
ATGATCTGGCAGACTTCTTTAAGCAGTGTGGGGTTGTCAAGATGAACAAGAGAACTGGACAACCCATGATCCATATCTAC
CTGGATAAGGAGACAGGAAAGCCTAAAGGGGACGCCACAGTGTCCTATGAAGATCCACCAACTGCAAAGGCTGCCGTGGA
ATGGTTTGATGGGAAAGATTTTCAAGGAAGCAAACTTAAAGTGTCTCTTGCCCGAAAGAAGCCTCCAATGAACAGCATGC
GGGGAGGCATGCCACCTCGTGAGGGCAGGGGGATGCCACCACCACTTCGTGGAGGTCCTGGTGGCCCAGGAGGCCCTGGA
GGACCCATGGGTCGCATGGGAGGCCGTGGAGGAGACAGAGGGGGCTTCCCTCCAAGAGGGCCCCGAGGCTCCAGAGGAAA
CCCCTCTGGAGGAGGAAATGTCCAGCACCGAGCTGGAGACTGGCAGTGTCCCAATCCGGGCTGTGGAAACCAGAACTTCG
CTTGGAGAACAGAATGCAACCAGTGTAAGGCCCCTAAGCCCGAGGGCTTCCTCCCGCCACCCTTTCCACCTCCGGGTGGT
GATCGTGGACGAGGTGGCCCTGGTGGCATGCGAGGAGGAAGAGGAGGACTCATGGACCGTGGTGGTCCTGGAGGAATGTT
CAGAGGTGGCAGAGGTGGAGACAGAGGAGGCTTCCGAGGTGGCCGTGGAATGGACCGAGGTGGCTTTGGTGGAGGAAGAC
GAGGTGGTCCTGGGGGGCCTCCTGGACCTTTAATGGAACAGATGGGAGGAAGAAGAGGCGGACGTGGAGGACCTGGGAAA
ATGGATAAAGGCGAGCACCGTCAGGAACGCAGAGACCGGCCCTACTAG

Library Parental gene expression (RPM)
SRP007412_brain 167 .37 RPM
SRP007412_cerebellum 225 .62 RPM
SRP007412_heart 108 .18 RPM
SRP007412_kidney 158 .02 RPM
SRP007412_liver 84 .96 RPM
SRP007412_testis 353 .52 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000008298 possible_ortholog 2 retrogenes
retro_amel_191, retro_amel_959,
Canis familiaris ENSCAFG00000012160 possible_ortholog 8 retrogenes
retro_cfam_1142, retro_cfam_1183, retro_cfam_1225, retro_cfam_133, retro_cfam_1397, retro_cfam_1736, retro_cfam_1889, retro_cfam_560,
Callithrix jacchus ENSCJAG00000019987 possible_ortholog 4 retrogenes
retro_cjac_1716, retro_cjac_2022, retro_cjac_2813, retro_cjac_2911,
Macropus eugenii ENSMEUG00000008703 possible_ortholog 1 retrogene
retro_meug_1424,
Myotis lucifugus ENSMLUG00000012058 possible_ortholog 1 retrogene
retro_mluc_328,
Monodelphis domestica ENSMODG00000008679 possible_ortholog 1 retrogene
retro_mdom_279,
Mustela putorius furo ENSMPUG00000013432 possible_ortholog 2 retrogenes
retro_mputfur_56, retro_mputfur_572,
Mus musculus ENSMUSG00000030795 within_species_paralog 2 retrogenes
retro_mmus_2710, retro_mmus_2952,
Oryctolagus cuniculus ENSOCUG00000004432 ortholog_one2many 2 retrogenes
retro_ocun_1346, retro_ocun_242,
Ictidomys tridecemlineatus ENSSTOG00000023177 possible_ortholog 1 retrogene
retro_itri_1892,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_1379 82.24 63.69
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Download FASTA sequences of all ENSMUSG00000009079 retrocopies