Parental gene:

Galnt1, ENSMUSG00000000420

Aliases:None
Description:UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 [Source:MGI Symbol;Acc:MGI:894693]
Organism:Mouse (Mus musculus)
Coordinates:18:24205343..24286818(+)


>ENSMUSG00000000420
ATGAGAAAATTTGCATATTGCAAGGTGGTTCTAGCCACCTCCTTGGTTTGGGTACTCTTGGATATGTTCCTGCTGCTTTA
CTTCAGTGAATGCAACAAATGTGAAGAGAAGCAGGAGAGAGGACTTCCTGCTGGTGACGTTCTAGAGCTAGTGCAGAAAC
CTCATGAAGGTCCTGGAGAAATGGGGAAACCAGTCGTCATTCCGAAAGAGGATCAAGAAAAGATGAAAGAGATGTTTAAA
ATCAATCAGTTCAACTTAATGGCAAGTGAGATGATTGCACTCAACAGATCCTTACCAGATGTGAGGTTAGAGGGGTGTAA
AACAAAGGTGTATCCAGATAACCTTCCTACAACAAGTGTGGTGATTGTTTTCCACAATGAGGCATGGAGCACACTTCTGC
GAACAGTCCATAGTGTCATTAATCGCTCGCCAAGACATATGATAGAAGAGATTGTTCTTGTAGATGATGCCAGTGAAAGA
GACTTTTTGAAAAGACCTCTAGAGAGTTATGTGAAAAAACTGAAAGTGCCGGTTCATGTAATTCGAATGGAGCAGCGCTC
TGGGTTGATCAGAGCTAGATTGAAAGGAGCTGCTGTGTCCAGAGGCCAAGTGATCACCTTCTTAGATGCTCACTGTGAAT
GCACCGCAGGGTGGCTGGAGCCTCTGTTGGCCCGGATCAAACATGACAGGAGGACAGTGGTGTGTCCTATCATCGACGTG
ATCAGTGATGACACTTTCGAGTACATGGCGGGCTCTGACATGACCTATGGTGGCTTCAACTGGAAGCTCAATTTTCGTTG
GTATCCTGTTCCCCAGCGAGAAATGGACAGAAGGAAAGGTGACAGGACTCTTCCTGTCAGAACACCTACAATGGCTGGAG
GCCTTTTTTCAATAGACAGAGATTACTTTCAGGAAATTGGAACATACGATGCTGGAATGGATATTTGGGGAGGAGAAAAC
CTAGAAATTTCATTTAGGATTTGGCAGTGTGGAGGAACTTTGGAAATAGTGACATGCTCCCATGTTGGTCATGTGTTTCG
GAAAGCTACACCTTACACATTTCCAGGAGGGACAGGGCAGATTATCAATAAGAATAACAGGCGGCTTGCAGAAGTATGGA
TGGATGAATTCAAGAATTTCTTCTATATAATTTCTCCAGGTGTTACAAAGGTAGATTATGGAGATATATCATCAAGACTT
GGCCTAAGACGTAAACTACAATGCAAACCTTTCTCTTGGTACCTAGAAAATATTTACCCTGATTCTCAAATTCCTCGTCA
CTATTTCTCATTGGGAGAGATACGAAATGTGGAAACAAATCAGTGTCTAGATAACATGGCTAGAAAAGAGAATGAAAAGG
TTGGAATCTTTAATTGTCATGGTATGGGAGGTAATCAGGTTTTCTCCTACACTGCCAACAAAGAAATTAGAACAGACGAC
CTTTGTTTGGACGTTTCCAAACTTAATGGCCCAGTCACCATGCTCAAATGCCACCACCTAAAAGGCAACCAGCTCTGGGA
GTATGACCCAGTGAAATTAACCCTGCAGCATGTGAACAGCAATCAGTGCCTGGATAAAGCCACAGAGGAGGACAGCCAGG
TGCCCAGCATTAGAGACTGCACTGGAAGCCGGTCCCAGCAGTGGCTTCTTCGAAACGTCACCCTTCCAGAAATATTCTGA

Library Parental gene expression (RPM)
SRP007412_brain 42 .54 RPM
SRP007412_cerebellum 45 .72 RPM
SRP007412_heart 74 .43 RPM
SRP007412_kidney 111 .55 RPM
SRP007412_liver 41 .40 RPM
SRP007412_testis 24 .52 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000011206 ortholog_one2one 1 retrogene
retro_btau_581,
Callithrix jacchus ENSCJAG00000021030 ortholog_one2one 2 retrogenes
retro_cjac_1554, retro_cjac_865,
Myotis lucifugus ENSMLUG00000001978 ortholog_one2many 1 retrogene
retro_mluc_163,
Mus musculus ENSMUSG00000039774 other_paralog 1 retrogene
retro_mmus_183,
Ictidomys tridecemlineatus ENSSTOG00000003311 ortholog_one2one 1 retrogene
retro_itri_954,
Tarsius syrichta ENSTSYG00000014610 ortholog_one2one 1 retrogene
retro_tsyr_1444,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_1312 76.37 61.36
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Download FASTA sequences of all ENSMUSG00000000420 retrocopies