Parental gene:

MMU.9925, ENSMMUG00000016544

Aliases:None
Description:proteasome subunit alpha type-6 [Source:RefSeq peptide;Acc:NP_001180482]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:7:98246602..98274453(+)


>ENSMMUG00000016544
ATGTCCCGTGGTTCCAGCGCCGGTTTTGACCGCCACATTACTATTTTTTCACCCGAGGGTCGGCTCTACCAAGTAGAATA
TGCTTTTAAGGCTATTAACCAGGGTGGCCTTACATCAGTAGCTGTCAGAGGGAAAGACTGTGCAGTAATTGTCACACAGA
AGAAAGTACCTGACAAATTATTGGATTCCAGCACAGTGACTCACTTATTCAAGATAACTGAAAACATTGGTTGTGTGATG
ACCGGAATGACAGCTGACAGCAGATCCCAGGTACAGAGGGCACGCTATGAGGCAGCTAACTGGAAATACAAGTATGGCTA
TGAGATTCCTGTGGACATGCTATGTAAAAGAATTGCCGATATTTCTCAGGTCTACACACAGAATGCTGAAATGAGGCCTC
TTGGTTGTTGTATGATTTTAATTGGTATAGATGAAGAGCAAGGCCCTCAGGTATATAAGTGTGATCCTGCAGGTTACTAC
TGTGGGTTTAAAGCCACTGCAGCAGGAGTTAAACAAACTGAGTCAACCAGCTTCCTTGAAAAAAAAGTGAAGAAGAAATT
TGACTGGACATTTGAACAGACAGTGGAAACTGCAATTACATGCCTGTCTACTGTTCTATCAATTGATTTCAAACCTTCAG
AAATAGAAGTTGGAGTAGTGACAGTTGAAAATCCTAAATTCAGGATTCTTACAGAAGCAGAGATTGATGCTCACCTTGTT
GCTCTAGCAGAGAGAGACTAA

Library Parental gene expression (RPM)
SRP007412_brain 14 .57 RPM
SRP007412_brain_prefrontal_cortex 22 .69 RPM
SRP007412_cerebellum 12 .27 RPM
SRP007412_heart 12 .78 RPM
SRP007412_kidney 12 .32 RPM
SRP007412_liver 12 .75 RPM
SRP007412_testis 27 .67 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000013409 ortholog_one2many 2 retrogenes
retro_cfam_1581, retro_cfam_743,
Echinops telfairi ENSETEG00000004892 ortholog_one2many 1 retrogene
retro_etel_1775,
Felis catus ENSFCAG00000026276 ortholog_one2many 1 retrogene
retro_fcat_973,
Homo sapiens ENSG00000100902 ortholog_one2many 2 retrogenes
retro_hsap_1228, retro_hsap_4923,
Macropus eugenii ENSMEUG00000016537 ortholog_one2many 1 retrogene
retro_meug_1217,
Microcebus murinus ENSMICG00000000083 ortholog_one2many 4 retrogenes
retro_mmur_104, retro_mmur_165, retro_mmur_752, retro_mmur_80,
Myotis lucifugus ENSMLUG00000010228 ortholog_one2many 1 retrogene
retro_mluc_822,
Mustela putorius furo ENSMPUG00000016288 ortholog_one2many 1 retrogene
retro_mputfur_1089,
Mus musculus ENSMUSG00000021024 ortholog_one2many 1 retrogene
retro_mmus_654,
Otolemur garnettii ENSOGAG00000008492 ortholog_one2many 10 retrogenes
retro_ogar_1273, retro_ogar_1397, retro_ogar_1928, retro_ogar_1950, retro_ogar_2021, retro_ogar_2073, retro_ogar_2274, retro_ogar_2488, retro_ogar_2521, retro_ogar_3089,
Pan troglodytes ENSPTRG00000006264 ortholog_one2many 2 retrogenes
retro_ptro_3297, retro_ptro_844,
Rattus norvegicus ENSRNOG00000007114 ortholog_one2many 4 retrogenes
retro_rnor_1724, retro_rnor_1960, retro_rnor_854, retro_rnor_924,
Ictidomys tridecemlineatus ENSSTOG00000011774 possible_ortholog 1 retrogene
retro_itri_1713,
Tupaia belangeri ENSTBEG00000011241 ortholog_one2many 17 retrogenes
retro_tbel_1304, retro_tbel_1415, retro_tbel_1789, retro_tbel_2028, retro_tbel_2466, retro_tbel_2519, retro_tbel_3227, retro_tbel_3280, retro_tbel_3535, retro_tbel_4181, retro_tbel_4183, retro_tbel_4357, retro_tbel_4465, retro_tbel_4495, retro_tbel_509, retro_tbel_602, retro_tbel_725,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_343 99.59 100.00
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Download FASTA sequences of all ENSMMUG00000016544 retrocopies