Parental gene:

VTI1B, ENSMMUG00000015866

Aliases:None
Description:vesicle transport through interaction with t-SNAREs homolog 1B [Source:RefSeq peptide;Acc:NP_001253288]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:7:130765279..130788995(-)


>ENSMMUG00000015866
ATGGCCGCCTCCGCCGCCTCCTCGGAGCATTTCGAGAAGCTGCACGAGATCTTCCGCGGCCTCCATGAAGACCTACAAGG
GGTGCCCGAGCGGCTGCTGGGGACTGCTGGGACCGAAGAGAAGAAGAAGTTGATCAGGGATTTTGATGAAAAGCAACAGG
AAGCAAATGAAACGCTGGCAGAGATGGAGGAGGAACTACGTTACGCACCCCTGTCTTTCCGTAACCCCATGATGTCTAAG
CTTCGAAACTACCGGAAGGACCTTGCTAAACTCCATCGGGAGGTGAGAAGCACACCTTTGACAGCCACACCTGGAGGCCG
AGGAGACATGAAATATGGCATATATGCTCTAGAGAATGAGCATATGAATCGGCTACAGTCTCAAAGGGCAATGCTTCTGC
AAGGCACTGAAAGCCTGAACCGGGCCACCCAAAGTATTGAACGCTCTCATCGGATTGCCACGGAGACCGACCAAATTGGC
TCAGAAATCATAGAAGAGCTGGGGGAACAACGAGACCAGTTAGAACGCACCAAGAGTAGACTGGTAAACACAAGTGAAAA
CTTGAGCAAAAGTCGAAAGATTCTCCGTTCAATGTCCAGAAAAGTGACAACCAACAAGCTGCTGCTTTCCATTATCATCT
TACTGGAGCTCGCCATCCTGGGAGGCCTGGTTTACTACAAATTCTTTCGCAGCCATTGA

Library Parental gene expression (RPM)
SRP007412_brain 47 .51 RPM
SRP007412_brain_prefrontal_cortex 57 .91 RPM
SRP007412_cerebellum 26 .60 RPM
SRP007412_heart 30 .21 RPM
SRP007412_kidney 34 .39 RPM
SRP007412_liver 13 .26 RPM
SRP007412_testis 24 .54 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000015263 ortholog_one2many 1 retrogene
retro_cjac_1439,
Dasypus novemcinctus ENSDNOG00000003643 ortholog_one2many 2 retrogenes
retro_dnov_1503, retro_dnov_2031,
Dipodomys ordii ENSDORG00000015939 ortholog_one2many 2 retrogenes
retro_dord_52, retro_dord_716,
Echinops telfairi ENSETEG00000006101 ortholog_many2many 1 retrogene
retro_etel_783,
Felis catus ENSFCAG00000014090 ortholog_one2many 1 retrogene
retro_fcat_1855,
Homo sapiens ENSG00000100568 ortholog_one2many 3 retrogenes
retro_hsap_1002, retro_hsap_2682, retro_hsap_3013,
Gorilla gorilla ENSGGOG00000005620 ortholog_one2many 2 retrogenes
retro_ggor_1871, retro_ggor_797,
Macropus eugenii ENSMEUG00000004910 ortholog_one2many 2 retrogenes
retro_meug_499, retro_meug_697,
Microcebus murinus ENSMICG00000010843 ortholog_one2many 1 retrogene
retro_mmur_849,
Myotis lucifugus ENSMLUG00000011184 ortholog_many2many 3 retrogenes
retro_mluc_1299, retro_mluc_2393, retro_mluc_781,
Mustela putorius furo ENSMPUG00000007130 ortholog_one2many 1 retrogene
retro_mputfur_1516,
Nomascus leucogenys ENSNLEG00000000780 ortholog_many2many 4 retrogenes
retro_nleu_1184, retro_nleu_2241, retro_nleu_231, retro_nleu_83,
Pongo abelii ENSPPYG00000005927 ortholog_one2many 5 retrogenes
retro_pabe_2298, retro_pabe_2498, retro_pabe_2602, retro_pabe_845, retro_pabe_974,
Pan troglodytes ENSPTRG00000006468 ortholog_one2many 3 retrogenes
retro_ptro_1808, retro_ptro_2037, retro_ptro_751,
Pteropus vampyrus ENSPVAG00000011671 ortholog_one2many 3 retrogenes
retro_pvam_132, retro_pvam_592, retro_pvam_797,
Tupaia belangeri ENSTBEG00000003049 ortholog_one2many 1 retrogene
retro_tbel_3432,
Tarsius syrichta ENSTSYG00000007688 ortholog_one2many 2 retrogenes
retro_tsyr_1662, retro_tsyr_94,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_1420 79.31 100.00
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Download FASTA sequences of all ENSMMUG00000015866 retrocopies