Parental gene:

VTI1B, ENSDNOG00000003643

Aliases:None
Description:vesicle transport through interaction with t-SNAREs 1B [Source:HGNC Symbol;Acc:17793]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_353:119184..139507(-)


>ENSDNOG00000003643
ATGGCCACCTCCGCCATGTCCTCGGAACGTTTCGAGAAACTGCACGAAATCTTCCGAGGTCTCCTTGAGGATCTACGCGT
GCCGGAGCGGCTGCTGGGGACGGCGGGGACAGAAGAGAAGAAGAAGTTGATCAGAGATTTTGATGAAAAGCAACAGGAAG
CAAATGAAACGTTGGCAGAGATGGAGAAGGAACTACGTTATGCACCCCTATCTTTCCGCAACCCCATGATGTCCAAGCTT
CGAACCTACAAGAAGGACCTTGGTAAACTCCATCGGGAGGTGAGAAGCACACCTTTGACAGCCACACCTGGGGGCCGGGG
AGATATGAAATACGGCACATATGTGGTGGAGAATGAGCATATGAATTGGCAACAGTCTCAGAGAGCATTGCTTCTGCAAG
GCACTGACAGCTTGAACCGGGCCACCCAGAGTATTGAGCGTTCTCATCGGATTGCCACAGAGACTGACCAGATTGGCTCA
GAAATCATAGAGGAACTCGGAGAACAACGAGAACAGTTGGAACGTACCAAGACTAGACTGGTAAGCACAAGTGAAAACTT
GAGCAAAAGTCGAAAGATTCTCCGTTCGATGTCCAGAAAAGTGGTGACCAATAAACTGCTGCTTTCCATCGTCATCTTAC
TGGAACTAGTCATCCTGGGAGGCCTGGTTTATTACAAATTTTTTCACAAGCGTTGA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 50 .56 RPM
SRP012922_cerebellum 51 .41 RPM
SRP012922_heart 71 .47 RPM
SRP012922_kidney 67 .63 RPM
SRP012922_liver 25 .85 RPM
SRP012922_lung 48 .72 RPM
SRP012922_quadricep_muscle 55 .21 RPM
SRP012922_spleen 53 .68 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000015263 ortholog_one2one 1 retrogene
retro_cjac_1439,
Dipodomys ordii ENSDORG00000015939 ortholog_one2one 2 retrogenes
retro_dord_52, retro_dord_716,
Echinops telfairi ENSETEG00000006101 ortholog_one2many 1 retrogene
retro_etel_783,
Felis catus ENSFCAG00000014090 ortholog_one2one 1 retrogene
retro_fcat_1855,
Homo sapiens ENSG00000100568 ortholog_one2one 3 retrogenes
retro_hsap_1002, retro_hsap_2682, retro_hsap_3013,
Gorilla gorilla ENSGGOG00000005620 ortholog_one2one 2 retrogenes
retro_ggor_1871, retro_ggor_797,
Macropus eugenii ENSMEUG00000004910 ortholog_one2one 2 retrogenes
retro_meug_499, retro_meug_697,
Microcebus murinus ENSMICG00000010843 ortholog_one2one 1 retrogene
retro_mmur_849,
Myotis lucifugus ENSMLUG00000011184 ortholog_one2many 3 retrogenes
retro_mluc_1299, retro_mluc_2393, retro_mluc_781,
Macaca mulatta ENSMMUG00000015866 ortholog_one2many 1 retrogene
retro_mmul_1420,
Mustela putorius furo ENSMPUG00000007130 ortholog_one2one 1 retrogene
retro_mputfur_1516,
Nomascus leucogenys ENSNLEG00000000780 ortholog_one2many 4 retrogenes
retro_nleu_1184, retro_nleu_2241, retro_nleu_231, retro_nleu_83,
Pongo abelii ENSPPYG00000005927 ortholog_one2one 5 retrogenes
retro_pabe_2298, retro_pabe_2498, retro_pabe_2602, retro_pabe_845, retro_pabe_974,
Pan troglodytes ENSPTRG00000006468 ortholog_one2one 3 retrogenes
retro_ptro_1808, retro_ptro_2037, retro_ptro_751,
Pteropus vampyrus ENSPVAG00000011671 ortholog_one2one 3 retrogenes
retro_pvam_132, retro_pvam_592, retro_pvam_797,
Tupaia belangeri ENSTBEG00000003049 ortholog_one2one 1 retrogene
retro_tbel_3432,
Tarsius syrichta ENSTSYG00000007688 ortholog_one2one 2 retrogenes
retro_tsyr_1662, retro_tsyr_94,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_1503 82.56 72.73
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_dnov_2031 82.66 73.59
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSDNOG00000003643 retrocopies