Parental gene:

CRLF3, ENSMMUG00000009069

Aliases:None
Description:cytokine receptor-like factor 3 [Source:RefSeq peptide;Acc:NP_001244548]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:16:27000102..27279087(-)


>ENSMMUG00000009069
ATGAGGGGGGCGATGGAGCTGGAGCCTGAGCTGCTGCTGCAGGAGGCCCGCGAGAATGTGGAGGCAGCGCAGAGCTACCG
GCGGGAGCTGGGTCACCGGCTTGAGGGGCTGCGGGAGGCGCGGAGGCAGATCAAAGAAAGTGCATCACAGACAAGAGATG
TTCTCAAACAGCATTTTAATGATTTAAAGGGAACCCTTGGAAAGCTCCTGGATGAGCGATTGGTGACCCTTTTGCAAGAG
GTGGACACCATTGAACAGGAGACCATTAAACCACTAGATGACTGCCAGAAGCTCATAGAACACGGAGTCAACACTGCAGA
AGACTTAGTCCGAGAAGGTGAGATTGCCATGCTTGGTGGTGTGGGAGAAGAGAATGAGAAACTGTGGAGCTTTACCAAAA
AGGCCTCGCACATTCAGTTGGACAGCTTACCAGAAGTACCTTTACTGGTTGATGTGCCTTGTTTATCTGCTCAGTTGGAT
GACTCAATTCTTAACATAGTGAAAGACCACATTTTTAAGCATGGAACAGTAGCATCTCGCCCACCAGTACAGATAGAAGA
ACTAATAGAGAAACCTGGAGGCATCATTGTACGATGGTGTAAGGTGGATGACGACTTTACAGCCCAAGATTACAGGCTCC
AGTTTCGTAAATGTACTTCAAATCATTTTGAGGATGTATATGTAGGTTCTGAAACTGAATTCATAGTATTGCACATAGAC
CCCAACGTTGATTATCAGTTCAGAGTCTGTGCCCGAGGAGATGGCCGACAGGAGTGGAGTCCTTGGAGTGTTCCCCAAAT
AGGTCATTCCACATTGGTGCCTCATGAGTGGACAGCTGGTTTTGAGGGGTACAGTCTGAGCAGTCGAAGAAATATAGCAC
TCCGGAATGATTCTGAATCATCAGGTGTTCTCTACTCCAGAGCTCCGACTTATTTCTGTGGACAGACATTAACATTCAGG
CAACTGGTTGAAACTGTGGGACAGCCAGACAGGAGAGACAGCATAGGAGTGTGTGCGGAAAAACAGGACGGATATGACTC
TCTGCAGCGGGACCAAGCTGTGTGCATTAGTACAAATGGTGCAGTTTTTGTCAATGGAAAAGAAATGACGAATCAGTTAC
CCGCAGTTACCTCTGGGTCCACTGTCACATTTGACATTGAAGCCGTGACTCTAGGAACCTGCAATAATAATGAAGGTGGA
CACTTCAAGCTTCGAGTAACTATAAGTTCAAATAACAGAGAAGTGGTTTTTGATTGGTTACTTGATCAGTCATGTGGTTC
TCTTTACTTTGGATGCTCATTTTTCTATCCTGGATGGAAAGTGTTAGTGTTTTAG

Library Parental gene expression (RPM)
SRP007412_brain 33 .05 RPM
SRP007412_brain_prefrontal_cortex 28 .72 RPM
SRP007412_cerebellum 20 .34 RPM
SRP007412_heart 5 .89 RPM
SRP007412_kidney 5 .52 RPM
SRP007412_liver 3 .64 RPM
SRP007412_testis 9 .46 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000014163 ortholog_one2many 1 retrogene
retro_cjac_1183,
Echinops telfairi ENSETEG00000017897 possible_ortholog 1 retrogene
retro_etel_313,
Felis catus ENSFCAG00000025986 possible_ortholog 1 retrogene
retro_fcat_1916,
Homo sapiens ENSG00000176390 ortholog_one2many 3 retrogenes
retro_hsap_2121, retro_hsap_2133, retro_hsap_3360,
Gorilla gorilla ENSGGOG00000005002 ortholog_one2many 3 retrogenes
retro_ggor_1644, retro_ggor_1649, retro_ggor_2278,
Mus musculus ENSMUSG00000017561 ortholog_one2many 1 retrogene
retro_mmus_368,
Nomascus leucogenys ENSNLEG00000005850 ortholog_one2many 4 retrogenes
retro_nleu_1957, retro_nleu_2534, retro_nleu_2899, retro_nleu_2900,
Pongo abelii ENSPPYG00000008142 ortholog_one2many 3 retrogenes
retro_pabe_1925, retro_pabe_1984, retro_pabe_2672,
Pan troglodytes ENSPTRG00000008963 ortholog_one2many 2 retrogenes
retro_ptro_1560, retro_ptro_2175,
Ictidomys tridecemlineatus ENSSTOG00000012342 possible_ortholog 1 retrogene
retro_itri_1384,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_998 66.67 50.68
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2. retro_mmul_1002 78.52 66.67
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Download FASTA sequences of all ENSMMUG00000009069 retrocopies