Parental gene:

MMU.192, ENSMMUG00000008532

Aliases:None
Description:None
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:15:10165385..10176883(-)


>ENSMMUG00000008532
ATGGCCCCTAAACGCCAGTCTCCACTCCTGCCTCAAAAGAAGAAACCAAGACCACCGCCTGCTCTGGGACCGGAGGAGAC
ATCAGCCTCTGCAGGCTTGCCGAAGAAGGGAGAAAAAGAACAGCAAGAAGCAATTGAACACATTGATGAAGTACAAAATG
AAATAGACAGACTTAATGAACAAGCCAGTGAGGAGATTTTGAAAGTAGAACAGAAATATAACAAACTCCGCCAACCATTT
TTTCAGAAGAGGTCAGAATTGATCGCCAAAATCCCAAATTTTTGGGTAACAACATTTGTCAACCATCCACAAGTGTCTGC
ACTGCTTGGGGAGGAAGACGAAGAGGCACTGCATTATTTGACCAGAGTTGAAGTGACAGAATTTGAAGATATTAAATCAG
GTTACAGAATAGATTTTTATTTTGATGAAAATCCTTACTTTGAAAATAAAGTTCTCTCCAAAGAATTTCATCTGAATGAG
AGTGGTGATCCATCTTCAAAGTCCACCGAAATCAAATGGAAATCTGGAAAGGATTTGACGAAACGTTCAAGTCAAACGCA
GAATAAAGCCAGCAGGAAGAGGCAGCATGAGGAACCAGAGAGCTTCTTTACCTGGTTTACTGACCATTCTGATGCAGGTG
CTGATGAGTTAGGAGAGGTCATCAAAGATGATATTTGGCCAAACCCATTACAGTACTACTTGGTTCCTGATATGGATGAT
GAAGAAGGAGAAGGAGAAGAAGATGATGATGATGATGAAGAGGAGGAAGGATTAGAAGATATTGATGAAGAAGGGGATGA
GGATGAAGGTGAAGAAGATGAAGATGATGATGAAGGGGAGGAAGGAGAGGAGGATGAAGGAGAAGATGACTAA

Library Parental gene expression (RPM)
SRP007412_brain 51 .10 RPM
SRP007412_brain_prefrontal_cortex 47 .36 RPM
SRP007412_cerebellum 49 .21 RPM
SRP007412_heart 40 .04 RPM
SRP007412_kidney 39 .20 RPM
SRP007412_liver 11 .68 RPM
SRP007412_testis 20 .69 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000015686 possible_ortholog 7 retrogenes
retro_amel_1093, retro_amel_1201, retro_amel_1459, retro_amel_1675, retro_amel_530, retro_amel_631, retro_amel_634,
Bos taurus ENSBTAG00000020959 possible_ortholog 8 retrogenes
retro_btau_1179, retro_btau_1490, retro_btau_1519, retro_btau_1556, retro_btau_464, retro_btau_469, retro_btau_749, retro_btau_955,
Canis familiaris ENSCAFG00000032728 ortholog_one2many 2 retrogenes
retro_cfam_47, retro_cfam_83,
Dasypus novemcinctus ENSDNOG00000002802 possible_ortholog 3 retrogenes
retro_dnov_160, retro_dnov_1830, retro_dnov_464,
Erinaceus europaeus ENSEEUG00000006238 ortholog_one2one 11 retrogenes
retro_eeur_152, retro_eeur_166, retro_eeur_173, retro_eeur_210, retro_eeur_260, retro_eeur_287, retro_eeur_452, retro_eeur_659, retro_eeur_696, retro_eeur_700, retro_eeur_701,
Felis catus ENSFCAG00000005848 possible_ortholog 2 retrogenes
retro_fcat_130, retro_fcat_89,
Homo sapiens ENSG00000119335 possible_ortholog 14 retrogenes
retro_hsap_1336, retro_hsap_1389, retro_hsap_1847, retro_hsap_241, retro_hsap_269, retro_hsap_2719, retro_hsap_2721, retro_hsap_3075, retro_hsap_3088, retro_hsap_3326, retro_hsap_3358, retro_hsap_420, retro_hsap_4722, retro_hsap_806,
Myotis lucifugus ENSMLUG00000014291 possible_ortholog 13 retrogenes
retro_mluc_1026, retro_mluc_1120, retro_mluc_1673, retro_mluc_1977, retro_mluc_2098, retro_mluc_2188, retro_mluc_2361, retro_mluc_2412, retro_mluc_2584, retro_mluc_419, retro_mluc_524, retro_mluc_855, retro_mluc_881,
Mustela putorius furo ENSMPUG00000013069 possible_ortholog 10 retrogenes
retro_mputfur_1330, retro_mputfur_1556, retro_mputfur_1581, retro_mputfur_1605, retro_mputfur_221, retro_mputfur_274, retro_mputfur_286, retro_mputfur_723, retro_mputfur_785, retro_mputfur_799,
Mus musculus ENSMUSG00000054766 ortholog_one2one 17 retrogenes
retro_mmus_1366, retro_mmus_1435, retro_mmus_1671, retro_mmus_1743, retro_mmus_2329, retro_mmus_2448, retro_mmus_2484, retro_mmus_2664, retro_mmus_2665, retro_mmus_3015, retro_mmus_3290, retro_mmus_345, retro_mmus_3513, retro_mmus_517, retro_mmus_887, retro_mmus_929, retro_mmus_967,
Nomascus leucogenys ENSNLEG00000017595 possible_ortholog 2 retrogenes
retro_nleu_108, retro_nleu_870,
Oryctolagus cuniculus ENSOCUG00000007501 ortholog_one2many 12 retrogenes
retro_ocun_1107, retro_ocun_1110, retro_ocun_1234, retro_ocun_1311, retro_ocun_1563, retro_ocun_276, retro_ocun_407, retro_ocun_421, retro_ocun_423, retro_ocun_476, retro_ocun_859, retro_ocun_923,
Otolemur garnettii ENSOGAG00000007635 possible_ortholog 13 retrogenes
retro_ogar_115, retro_ogar_1370, retro_ogar_3084, retro_ogar_3186, retro_ogar_3195, retro_ogar_3289, retro_ogar_447, retro_ogar_465, retro_ogar_543, retro_ogar_565, retro_ogar_806, retro_ogar_899, retro_ogar_934,
Pongo abelii ENSPPYG00000019659 possible_ortholog 17 retrogenes
retro_pabe_1076, retro_pabe_1110, retro_pabe_1150, retro_pabe_1218, retro_pabe_1452, retro_pabe_1717, retro_pabe_1771, retro_pabe_2549, retro_pabe_2557, retro_pabe_2740, retro_pabe_299, retro_pabe_3667, retro_pabe_400, retro_pabe_414, retro_pabe_470, retro_pabe_720, retro_pabe_838,
Ictidomys tridecemlineatus ENSSTOG00000010546 ortholog_one2many 6 retrogenes
retro_itri_1204, retro_itri_1588, retro_itri_477, retro_itri_529, retro_itri_603, retro_itri_876,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_362 92.34 81.03
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2. retro_mmul_419 71.15 57.14
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3. retro_mmul_569 77.05 83.10
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4. retro_mmul_1133 57.40 56.21
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5. retro_mmul_1261 76.60 80.34
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6. retro_mmul_1534 73.16 69.55
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7. retro_mmul_2096 85.32 74.14
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8. retro_mmul_2175 83.19 82.07
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9. retro_mmul_2241 83.06 63.10
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10. retro_mmul_2262 94.64 76.90
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11. retro_mmul_2614 93.62 81.03
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Download FASTA sequences of all ENSMMUG00000008532 retrocopies