Parental gene:

ARL6IP1, ENSG00000170540

Aliases:ARL6IP1, AIP1, ARL6IP, ARMER, SPG61
Description:ADP-ribosylation factor-like 6 interacting protein 1 [Source:HGNC Symbol;Acc:697]
Organism:Human (Homo sapiens)
Coordinates:16:18802990..18813000(-)


>ENSG00000170540
ATGGCGGAGGGAGATAATCGCAGCACCAACCTGCTGGCTGCAGAGACTGCAAGTCTGGAAGAACAGCTGCAAGGATGGGG
AGAAGTGATGCTGATGGCTGATAAAGTCCTCCGATGGGAAAGAGCCTGGTTTCCACCTGCCATCATGGGTGTGGTTTCTT
TGGTGTTTCTGATTATCTACTATCTAGATCCATCTGTTCTGTCCGGCGTTTCCTGTTTTGTTATGTTTTTGTGCTTGGCT
GACTACCTTGTTCCCATTCTAGCGCCTAGAATTTTTGGCTCCAATAAATGGACCACTGAACAACAGCAAAGATTCCATGA
AATTTGCAGCAATCTAGTAAAAACTCGACGCAGAGCTGTGGGTTGGTGGAAACGCCTCTTCACACTAAAGGAAGAAAAAC
CTAAGATGTACTTCATGACCATGATCGTTTCCCTTGCTGCGGTTGCTTGGGTGGGACAACAAGTCCACAACCTGCTTCTC
ACCTACCTGATAGTGACTTCCTTACTATTGCTTCCTGGACTAAACCAACATGGAATCATTTTGAAGTACATTGGAATGGC
CAAGAGGGAGATAAACAAACTTCTCAAACAAAAAGAAAAGAAAAACGAATGA

Library Parental gene expression (RPM)
bodymap2_adipose 173 .93 RPM
bodymap2_adrenal 111 .19 RPM
bodymap2_brain 507 .76 RPM
bodymap2_breast 192 .65 RPM
bodymap2_colon 192 .72 RPM
bodymap2_heart 43 .61 RPM
bodymap2_kidney 179 .36 RPM
bodymap2_liver 115 .93 RPM
bodymap2_lung 155 .36 RPM
bodymap2_lymph_node 148 .86 RPM
bodymap2_ovary 175 .28 RPM
bodymap2_prostate 149 .63 RPM
bodymap2_skeletal_muscle 22 .64 RPM
bodymap2_testis 211 .42 RPM
bodymap2_thyroid 131 .72 RPM
bodymap2_white_blood_cells 181 .50 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000018174 possible_ortholog 20 retrogenes
retro_cfam_114, retro_cfam_1204, retro_cfam_1232, retro_cfam_1261, retro_cfam_127, retro_cfam_1301, retro_cfam_1348, retro_cfam_1364, retro_cfam_1525, retro_cfam_1582, retro_cfam_1605, retro_cfam_1642, retro_cfam_1745, retro_cfam_1966, retro_cfam_21, retro_cfam_427, retro_cfam_464, retro_cfam_699, retro_cfam_831, retro_cfam_888,
Choloepus hoffmanni ENSCHOG00000007800 ortholog_one2one 5 retrogenes
retro_chof_1153, retro_chof_1320, retro_chof_2130, retro_chof_2284, retro_chof_270,
Callithrix jacchus ENSCJAG00000020068 ortholog_one2many 2 retrogenes
retro_cjac_782, retro_cjac_857,
Cavia porcellus ENSCPOG00000012603 ortholog_one2one 1 retrogene
retro_cpor_291,
Erinaceus europaeus ENSEEUG00000005434 ortholog_one2one 1 retrogene
retro_eeur_186,
Echinops telfairi ENSETEG00000020152 ortholog_one2one 2 retrogenes
retro_etel_2083, retro_etel_549,
Gorilla gorilla ENSGGOG00000002902 ortholog_one2one 3 retrogenes
retro_ggor_1080, retro_ggor_505, retro_ggor_729,
Loxodonta africana ENSLAFG00000018632 ortholog_one2one 2 retrogenes
retro_lafr_420, retro_lafr_741,
Macropus eugenii ENSMEUG00000007896 ortholog_one2many 1 retrogene
retro_meug_1842,
Microcebus murinus ENSMICG00000012246 ortholog_one2one 5 retrogenes
retro_mmur_1383, retro_mmur_1561, retro_mmur_582, retro_mmur_939, retro_mmur_951,
Monodelphis domestica ENSMODG00000005944 ortholog_one2many 1 retrogene
retro_mdom_794,
Nomascus leucogenys ENSNLEG00000005499 ortholog_one2one 2 retrogenes
retro_nleu_1079, retro_nleu_381,
Ornithorhynchus anatinus ENSOANG00000012228 possible_ortholog 2 retrogenes
retro_oana_100, retro_oana_77,
Oryctolagus cuniculus ENSOCUG00000005740 ortholog_one2one 1 retrogene
retro_ocun_1921,
Otolemur garnettii ENSOGAG00000013202 ortholog_one2one 2 retrogenes
retro_ogar_3502, retro_ogar_3504,
Pongo abelii ENSPPYG00000007140 ortholog_one2one 3 retrogenes
retro_pabe_1153, retro_pabe_2798, retro_pabe_777,
Pan troglodytes ENSPTRG00000007824 ortholog_one2one 3 retrogenes
retro_ptro_418, retro_ptro_622, retro_ptro_957,
Pteropus vampyrus ENSPVAG00000002906 ortholog_one2one 1 retrogene
retro_pvam_1337,
Sarcophilus harrisii ENSSHAG00000017346 ortholog_one2many 1 retrogene
retro_shar_691,
Ictidomys tridecemlineatus ENSSTOG00000005816 ortholog_one2one 1 retrogene
retro_itri_1595,
Tupaia belangeri ENSTBEG00000013916 ortholog_one2one 3 retrogenes
retro_tbel_1609, retro_tbel_3046, retro_tbel_3772,
Tarsius syrichta ENSTSYG00000011092 ortholog_one2one 1 retrogene
retro_tsyr_1528,
Tursiops truncatus ENSTTRG00000005171 ortholog_one2one 5 retrogenes
retro_ttru_1610, retro_ttru_1701, retro_ttru_519, retro_ttru_71, retro_ttru_929,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_559 86.51 71.84
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2. retro_hsap_902 88.80 61.58
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3. retro_hsap_1393 75.61 100.00
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Download FASTA sequences of all ENSG00000170540 retrocopies