Parental gene:

HADH, ENSG00000138796

Aliases:HADH, HAD, HADH1, HADHSC, HCDH, HHF4, MSCHAD, SCHAD
Description:hydroxyacyl-CoA dehydrogenase [Source:HGNC Symbol;Acc:4799]
Organism:Human (Homo sapiens)
Coordinates:4:108910869..108956331(+)


>ENSG00000138796
ATGGCCTTCGTCACCAGGCAGTTCATGCGTTCCGTGTCCTCCTCGTCCACCGCCTCGGCCTCGGCCAAGAAGATAATCGT
CAAGCACGTGACGGTCATCGGCGGCGGGCTGATGGGCGCCGGCATTGCCCAGGTTGCTGCAGCAACTGGTCACACAGTAG
TGTTGGTAGACCAGACAGAGGACATCCTGGCAAAATCCAAAAAGGGAATTGAGGAAAGCCTTAGGAAAGTGGCAAAGAAG
AAGTTTGCAGAAAACCTTAAGGCCGGCGATGAATTTGTGGAGAAGACCCTGAGCACCATAGCGACCAGCACGGATGCAGC
CTCCGTTGTCCACAGCACAGACTTGGTGGTGGAAGCCATCGTGGAGAATCTGAAGGTGAAAAACGAGCTCTTCAAAAGGC
TGGACAAGTTTGCTGCTGAACATACAATCTTTGCCAGCAACACTTCCTCCTTGCAGATTACAAGCATAGCTAATGCCACC
ACCAGACAAGACCGATTCGCTGGCCTCCATTTCTTCAACCCAGTGCCTGTCATGAAACTTGTGGAGGTCATTAAAACACC
AATGACCAGCCAGAAGACATTTGAATCTTTGGTAGACTTTAGCAAAGCCCTAGGAAAGCATCCTGTTTCTTGCAAGGACA
CTCCTGGGTTTATTGTGAACCGCCTCCTGGTTCCATACCTCATGGAAGCAATCAGGCTGTATGAACGAGACTTCCAAACG
TGTGGTGATTCTAACTCGGGTTTGGGCTTTTCTTTAAAAGGTGACGCATCCAAAGAAGACATTGACACTGCTATGAAATT
AGGAGCCGGTTACCCCATGGGCCCATTTGAGCTTCTAGATTATGTCGGACTGGATACTACGAAGTTCATCGTGGATGGGT
GGCATGAAATGGATGCAGAGAACCCATTACATCAGCCCAGCCCATCCTTAAATAAGCTGGTAGCAGAGAACAAGTTCGGC
AAGAAGACTGGAGAAGGATTTTACAAATACAAGTGA

Library Parental gene expression (RPM)
bodymap2_adipose 73 .91 RPM
bodymap2_adrenal 33 .51 RPM
bodymap2_brain 19 .88 RPM
bodymap2_breast 124 .03 RPM
bodymap2_colon 63 .17 RPM
bodymap2_heart 164 .34 RPM
bodymap2_kidney 70 .83 RPM
bodymap2_liver 98 .54 RPM
bodymap2_lung 29 .68 RPM
bodymap2_lymph_node 35 .51 RPM
bodymap2_ovary 45 .65 RPM
bodymap2_prostate 71 .51 RPM
bodymap2_skeletal_muscle 77 .68 RPM
bodymap2_testis 48 .72 RPM
bodymap2_thyroid 66 .98 RPM
bodymap2_white_blood_cells 18 .70 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000002049 ortholog_one2one 2 retrogenes
retro_btau_1111, retro_btau_1685,
Callithrix jacchus ENSCJAG00000015938 ortholog_one2one 1 retrogene
retro_cjac_772,
Echinops telfairi ENSETEG00000013807 ortholog_one2one 1 retrogene
retro_etel_1694,
Felis catus ENSFCAG00000022260 ortholog_one2one 1 retrogene
retro_fcat_1225,
Homo sapiens ENSG00000084754 within_species_paralog 1 retrogene
retro_hsap_958,
Gorilla gorilla ENSGGOG00000004423 ortholog_one2one 1 retrogene
retro_ggor_1196,
Macaca mulatta ENSMMUG00000023254 ortholog_one2one 1 retrogene
retro_mmul_2217,
Nomascus leucogenys ENSNLEG00000012951 ortholog_one2one 1 retrogene
retro_nleu_1738,
Pongo abelii ENSPPYG00000014986 ortholog_one2one 1 retrogene
retro_pabe_1296,
Pan troglodytes ENSPTRG00000016351 ortholog_one2one 1 retrogene
retro_ptro_1058,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_1571 75.54 88.22
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Download FASTA sequences of all ENSG00000138796 retrocopies