Parental gene: | PCGF1, ENSG00000115289 |
| Aliases: | None |
| Description: | polycomb group ring finger 1 [Source:HGNC Symbol;Acc:17615] |
| Organism: | Human (Homo sapiens) |
| Coordinates: | 2:74732169..74735707(-) |
>ENSG00000115289
ATGGCGTCTCCTCAGGGGGGCCAGATTGCGATCGCGATGAGGCTTCGGAACCAGCTCCAGTCAGTGTACAAGATGGACCC
GCTACGGAACGAGGAGGAGGTTCGAGTGAAGATCAAAGACTTGAATGAACACATTGTTTGCTGCCTATGCGCCGGCTACT
TCGTGGATGCCACCACCATCACAGAGTGTCTTCATACTTTCTGCAAGAGTTGTATTGTGAAGTACCTCCAAACTAGCAAG
TACTGCCCCATGTGCAACATTAAGATCCACGAGACACAGCCACTGCTCAACCTCAAACTGGACCGGGTCATGCAGGACAT
CGTGTATAAGCTGGTGCCTGGCTTGCAAGACAGTGAAGAGAAACGGATTCGGGAATTCTACCAGTCCCGAGGTTTGGACC
GGGTCACCCAGCCCACTGGGGAAGAGCCAGCACTGAGCAACCTCGGCCTCCCCTTCAGCAGCTTTGACCACTCTAAAGCC
CACTACTATCGCTATGATGAGCAGTTGAACCTGTGCCTGGAGCGGCTGAGTTCTGGCAAAGACAAGAATAAAAGCGTCCT
GCAGAACAAGTATGTCCGATGTTCTGTTAGAGCTGAGGTACGCCATCTCCGGAGGGTCCTGTGTCACCGCTTGATGCTAA
ACCCTCAGCATGTGCAGCTCCTTTTTGACAATGAAGTTCTCCCTGATCACATGACAATGAAGCAGATATGGCTCTCCCGC
TGGTTCGGCAAGCCATCCCCTTTGCTTTTACAATACAGTGTGAAAGAGAAGAGGAGGTAG
| Library | Parental gene expression (RPM) |
|---|---|
| bodymap2_adipose | 5 .82 RPM |
| bodymap2_adrenal | 9 .25 RPM |
| bodymap2_brain | 4 .15 RPM |
| bodymap2_breast | 7 .59 RPM |
| bodymap2_colon | 12 .96 RPM |
| bodymap2_heart | 4 .43 RPM |
| bodymap2_kidney | 8 .60 RPM |
| bodymap2_liver | 7 .50 RPM |
| bodymap2_lung | 6 .91 RPM |
| bodymap2_lymph_node | 8 .84 RPM |
| bodymap2_ovary | 8 .79 RPM |
| bodymap2_prostate | 11 .21 RPM |
| bodymap2_skeletal_muscle | 5 .35 RPM |
| bodymap2_testis | 10 .37 RPM |
| bodymap2_thyroid | 12 .99 RPM |
| bodymap2_white_blood_cells | 8 .70 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Mus musculus | ENSMUSG00000069678 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000000752 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000012270 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000012094 | ortholog_one2one | 1 retrogene | |
| Sorex araneus | ENSSARG00000007319 | ortholog_one2one | 1 retrogene | |
| Sus scrofa | ENSSSCG00000008277 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_hsap_1029 | 82.58 | 50.58 | Please wait, loading  |
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Download FASTA sequences of all ENSG00000115289 retrocopies