Parental gene: | SKP1, ENSG00000113558 |
| Aliases: | None |
| Description: | S-phase kinase-associated protein 1 [Source:HGNC Symbol;Acc:10899] |
| Organism: | Human (Homo sapiens) |
| Coordinates: | 5:133484632..133561762(-) |
>ENSG00000113558
ATGCCTTCAATTAAGTTGCAGAGTTCTGATGGAGAGATATTTGAAGTTGATGTGGAAATTGCCAAACAATCTGTGACTAT
TAAGACCATGTTGGAAGATTTGGGAATGGATGATGAAGGAGATGATGACCCAGTTCCTCTACCAAATGTGAATGCAGCAA
TATTAAAAAAGGTCATTCAGTGGTGCACCCACCACAAGGATGACCCTCCTCCTCCTGAAGATGATGAGAACAAAGAAAAG
CGAACAGATGATATCCCTGTTTGGGACCAAGAATTCCTGAAAGTTGACCAAGGAACACTTTTTGAACTCATTCTGGCTGC
AAACTACTTAGACATCAAAGGTTTGCTTGATGTTACATGCAAGACTGTTGCCAATATGATCAAGGGGAAAACTCCTGAGG
AGATTCGCAAGACCTTCAATATCAAAAATGACTTTACTGAAGAGGAGGAAGCCCAGGTACGCAAAGAGAACCAGTGGTGT
GAAGAGAAGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| bodymap2_adipose | 175 .38 RPM |
| bodymap2_adrenal | 194 .81 RPM |
| bodymap2_brain | 550 .19 RPM |
| bodymap2_breast | 262 .45 RPM |
| bodymap2_colon | 322 .35 RPM |
| bodymap2_heart | 258 .01 RPM |
| bodymap2_kidney | 293 .48 RPM |
| bodymap2_liver | 126 .74 RPM |
| bodymap2_lung | 289 .33 RPM |
| bodymap2_lymph_node | 205 .72 RPM |
| bodymap2_ovary | 332 .80 RPM |
| bodymap2_prostate | 379 .52 RPM |
| bodymap2_skeletal_muscle | 242 .52 RPM |
| bodymap2_testis | 408 .79 RPM |
| bodymap2_thyroid | 345 .44 RPM |
| bodymap2_white_blood_cells | 204 .75 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000025191 | ortholog_one2one | 5 retrogenes | |
| Canis familiaris | ENSCAFG00000000994 | ortholog_one2one | 5 retrogenes | |
| Callithrix jacchus | ENSCJAG00000013613 | possible_ortholog | 1 retrogene | |
| Echinops telfairi | ENSETEG00000007560 | possible_ortholog | 5 retrogenes | |
| Gorilla gorilla | ENSGGOG00000022930 | ortholog_one2one | 7 retrogenes | |
| Loxodonta africana | ENSLAFG00000016832 | ortholog_one2one | 1 retrogene | |
| Microcebus murinus | ENSMICG00000017588 | possible_ortholog | 3 retrogenes | |
| Myotis lucifugus | ENSMLUG00000022919 | possible_ortholog | 13 retrogenes | |
| Monodelphis domestica | ENSMODG00000014168 | possible_ortholog | 4 retrogenes | |
| Otolemur garnettii | ENSOGAG00000028707 | ortholog_one2one | 8 retrogenes | |
| Pongo abelii | ENSPPYG00000015783 | possible_ortholog | 7 retrogenes | |
| Rattus norvegicus | ENSRNOG00000005828 | ortholog_one2one | 6 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_hsap_724 | 79.00 | 61.35 | Please wait, loading  |
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| 2. | retro_hsap_972 | 90.41 | 89.57 | Please wait, loading |
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| 3. | retro_hsap_2193 | 66.67 | 69.94 | Please wait, loading |
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| 4. | retro_hsap_2596 | 53.76 | 55.21 | Please wait, loading |
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| 5. | retro_hsap_3321 | 68.70 | 66.87 | Please wait, loading |
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| 6. | retro_hsap_3346 | 71.95 | 100.00 | Please wait, loading |
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| 7. | retro_hsap_3863 | 94.48 | 100.00 | Please wait, loading |
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| 8. | retro_hsap_4161 | 78.18 | 76.06 | Please wait, loading |
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| 9. | retro_hsap_4163 | 78.18 | 66.26 | Please wait, loading |
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| 10. | retro_hsap_4164 | 78.18 | 66.26 | Please wait, loading |
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Download FASTA sequences of all ENSG00000113558 retrocopies