Parental gene:

CHTOP, ENSFCAG00000002740

Aliases:None
Description:chromatin target of PRMT1 [Source:HGNC Symbol;Acc:24511]
Organism:Cat (Felis catus)
Coordinates:F1:68470523..68478151(-)


>ENSFCAG00000002740
ATGGCTGCACAGTCAGCGCCGAAAGTTGTGCTAAAAAGCACCACCAAGATGTCTCTAAATGAGCGCTTTACTAATATGCT
GAAGAACAAACAGCCGATGCCAGTGAATATTCGGGCTTCGATGCAGCAACAACAGCAGCTAGCCAGTGCCAGAAACAGAA
GACTGGCCCAGCAGATGGAGAATAGACCCTCTGTCCAGGCAGCATTAAAACTTAAGCAGAAGAGCTTAAAGCAGCGCCTG
GGTAAGAGTAACATCCAGGCACGGTTAGGCCGACCCATAGGGACCCTGGCCAGGGGAGCAATCGGAGGACGAGGCCTGCC
CATAATCCAGAGAGGCTTGCCCAGAGGAGGACTACGAGGGGGACGTGCCACCAGAACCCTGCTTAGGGGCGGGATGTCGC
TCCGAGGTCAAAACCTGCTCCGAGGTGGACGAGCCGTAGCTCCCCGAATGGGCTTAAGAAGAGGTGGTGTTCGAGGTCGT
GGAGGTCCTGGGAGAGGGGGCCTAGGGCGTGGAGCTATGGGTCGTGGCGGAATCGGTGGTAGAGGTCGGGGTATGATAGG
TCGGGGAAGAGGGGGCTTTGGAGGCCGAGGCCGAGGCCGTGGACGAGGGAGAGGTGCCCTCACTCGCCCTGTGCTGACCA
AGGAGCAGCTGGACAACCAGTTGGATGCGTACATGTCAAAAACAAAAGGACACCTGGATGCCGAGTTGGATGCTTATATG
GCACAAACAGATCCAGAAACCAATGATTGA

Library Parental gene expression (RPM)
SRP017611_brain 57 .16 RPM
SRP017611_kidney 47 .41 RPM
SRP017611_liver 40 .64 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000013518 ortholog_one2one 1 retrogene
retro_chof_6,
Callithrix jacchus ENSCJAG00000010383 ortholog_one2one 3 retrogenes
retro_cjac_2059, retro_cjac_423, retro_cjac_431,
Myotis lucifugus ENSMLUG00000016098 ortholog_one2many 2 retrogenes
retro_mluc_201, retro_mluc_247,
Mus musculus ENSMUSG00000001017 ortholog_one2one 2 retrogenes
retro_mmus_1693, retro_mmus_1852,
Rattus norvegicus ENSRNOG00000012760 ortholog_one2many 1 retrogene
retro_rnor_1095,
Ictidomys tridecemlineatus ENSSTOG00000000660 ortholog_one2one 1 retrogene
retro_itri_1169,
Tupaia belangeri ENSTBEG00000012442 ortholog_one2one 1 retrogene
retro_tbel_293,
Vicugna pacos ENSVPAG00000010259 ortholog_one2one 1 retrogene
retro_vpac_353,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_1925 68.89 71.08
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Download FASTA sequences of all ENSFCAG00000002740 retrocopies