Parental gene:

SET, ENSETEG00000016746

Aliases:None
Description:SET nuclear oncogene [Source:HGNC Symbol;Acc:10760]
Organism:Lesser hedgehog tenrec (Echinops telfairi)
Coordinates:GeneScaffold_2728:5919..11053(+)


>ENSETEG00000016746
ATGGCCCCTAAGCGCCAGCCTTCGAGCCTGCCGCAAATGAAGAAACCCAAGGTGCAGGGGACCCCGGCCCCCCCGAAGGA
AGAAAAAGAACAACAGGAAGCAATTGAGCATATTGATGAGGTACAGAATGAAATAGACAGACTTAACGAACAAGCCAGTG
AGGAGATTTTGAAAGTAGAACAGAAATATAACAAACTCCGCCAACCATTCTTCCAGAAGAGGTCAGAATTGATCGCCAAA
ATCCCAAATTTTTGGGTAACAACATTTGTCAACCACCCGCAAGTGTCTGCATTACTTGGGGAAGAGGATGAAGAGGCTCT
GCATTATTTGACCAGAGTTGAAGTGACAGAATTTGAAGATATTAAATCAGGTTACAGAATAGATTTTTATTTTGATGAAA
ATCCTTACTTTGAAAATAAAGTTCTCTCCAAAGAATTTCATCTGAATGAGAGTGGTGATCCATCCTCAAAATCAACTGAA
ATCAAATGGAAATCTGGAAAGGACTTGACGAAACGATCCAGTCAGACACAGAACAAAGCCAGCAGGAAGAGGCAGCATGA
AGAACCGGAGAGTTTCTTTACCTGGTTTTCCGACCACTCTGATGCAGGCGCAGATGAGTTAGGGGAGGTCATCAAAGATG
ACATTTGGCCTAATCCATTACAGTACTACTTG

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000015686 possible_ortholog 7 retrogenes
retro_amel_1093, retro_amel_1201, retro_amel_1459, retro_amel_1675, retro_amel_530, retro_amel_631, retro_amel_634,
Bos taurus ENSBTAG00000020959 possible_ortholog 8 retrogenes
retro_btau_1179, retro_btau_1490, retro_btau_1519, retro_btau_1556, retro_btau_464, retro_btau_469, retro_btau_749, retro_btau_955,
Canis familiaris ENSCAFG00000032728 possible_ortholog 2 retrogenes
retro_cfam_47, retro_cfam_83,
Felis catus ENSFCAG00000005848 possible_ortholog 2 retrogenes
retro_fcat_130, retro_fcat_89,
Myotis lucifugus ENSMLUG00000014291 ortholog_one2one 13 retrogenes
retro_mluc_1026, retro_mluc_1120, retro_mluc_1673, retro_mluc_1977, retro_mluc_2098, retro_mluc_2188, retro_mluc_2361, retro_mluc_2412, retro_mluc_2584, retro_mluc_419, retro_mluc_524, retro_mluc_855, retro_mluc_881,
Mustela putorius furo ENSMPUG00000013069 ortholog_one2one 10 retrogenes
retro_mputfur_1330, retro_mputfur_1556, retro_mputfur_1581, retro_mputfur_1605, retro_mputfur_221, retro_mputfur_274, retro_mputfur_286, retro_mputfur_723, retro_mputfur_785, retro_mputfur_799,
Mus musculus ENSMUSG00000054766 ortholog_one2one 17 retrogenes
retro_mmus_1366, retro_mmus_1435, retro_mmus_1671, retro_mmus_1743, retro_mmus_2329, retro_mmus_2448, retro_mmus_2484, retro_mmus_2664, retro_mmus_2665, retro_mmus_3015, retro_mmus_3290, retro_mmus_345, retro_mmus_3513, retro_mmus_517, retro_mmus_887, retro_mmus_929, retro_mmus_967,
Nomascus leucogenys ENSNLEG00000017595 possible_ortholog 2 retrogenes
retro_nleu_108, retro_nleu_870,
Oryctolagus cuniculus ENSOCUG00000007501 possible_ortholog 12 retrogenes
retro_ocun_1107, retro_ocun_1110, retro_ocun_1234, retro_ocun_1311, retro_ocun_1563, retro_ocun_276, retro_ocun_407, retro_ocun_421, retro_ocun_423, retro_ocun_476, retro_ocun_859, retro_ocun_923,
Otolemur garnettii ENSOGAG00000007635 possible_ortholog 13 retrogenes
retro_ogar_115, retro_ogar_1370, retro_ogar_3084, retro_ogar_3186, retro_ogar_3195, retro_ogar_3289, retro_ogar_447, retro_ogar_465, retro_ogar_543, retro_ogar_565, retro_ogar_806, retro_ogar_899, retro_ogar_934,
Pongo abelii ENSPPYG00000019659 ortholog_one2one 17 retrogenes
retro_pabe_1076, retro_pabe_1110, retro_pabe_1150, retro_pabe_1218, retro_pabe_1452, retro_pabe_1717, retro_pabe_1771, retro_pabe_2549, retro_pabe_2557, retro_pabe_2740, retro_pabe_299, retro_pabe_3667, retro_pabe_400, retro_pabe_414, retro_pabe_470, retro_pabe_720, retro_pabe_838,
Ictidomys tridecemlineatus ENSSTOG00000010546 possible_ortholog 6 retrogenes
retro_itri_1204, retro_itri_1588, retro_itri_477, retro_itri_529, retro_itri_603, retro_itri_876,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_etel_109 87.50 66.52
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2. retro_etel_835 63.31 60.71
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3. retro_etel_920 67.65 88.84
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4. retro_etel_939 95.05 88.39
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5. retro_etel_1039 81.34 59.82
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6. retro_etel_1123 70.93 75.45
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7. retro_etel_1372 81.89 55.80
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8. retro_etel_1649 93.33 60.27
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9. retro_etel_1790 90.57 94.64
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10. retro_etel_1872 70.00 52.68
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11. retro_etel_1880 56.05 69.64
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12. retro_etel_1930 86.98 75.00
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13. retro_etel_1937 61.98 53.12
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14. retro_etel_2110 97.45 69.64
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15. retro_etel_2159 78.44 74.11
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Download FASTA sequences of all ENSETEG00000016746 retrocopies