Parental gene:

ENSECAG00000024877

Aliases:None
Description:None
Organism:Horse (Equus caballus)
Coordinates:3:117728208..117746724(-)


>ENSECAG00000024877
ATGAGTACGAGAAAGCGTCGTGGCGGGACAGTAAATTCTAGACAAGCCCAGAAGCGAACTCGGGAAGCAGCCTCCACCCC
TGAGATGGCCTTGGAAGCAGAACCCATAGAACTCGTGGAAAGTGCTGGTGACGAAATAGTGGACCTCACCTGTGAATCTT
TAGAGCCTGTGGTTGTCGACTTGACTCACAATGACTCTGTCGTGATCGTTGACGAAAGGAGGCGGCCAAGGAGGAATGCG
AGGAGGCTACGCCAGGACCACGCTGACAGCTGTGTTGTGAGCAGTGATGACGAGGAGCTGTCCAGGGATAGAGACGTGTA
TGTGACCACCCATACTCCGAGAAACACCAGGGAAGAGGCAGCTACGGGACTCAGGCCCTCTGGTACTGTCAGTTGTCCGA
TCTGCATGGACGGGTACTCGGAGATTGTGCAGAATGGACGTCTCATTGTTTCTACAGAATGTGGCCATGTCTTCTGTAGC
CAGTGCCTCCGTGATTCCCTTAAGAATGCTAACACTTGCCCAACTTGCAGGAAAAAGATCAACCACAAACGATACCACCC
CATTTATATATGA

Library Parental gene expression (RPM)
SRP021940_articular_cartilage 12 .16 RPM
SRP021940_cerebellum 24 .41 RPM
SRP021940_embryo 32 .63 RPM
SRP021940_placental_villous 24 .73 RPM
SRP021940_synovial_membrane 28 .17 RPM
SRP021940_testis 54 .10 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000014366 ortholog_one2one 1 retrogene
retro_amel_77,
Canis familiaris ENSCAFG00000014856 ortholog_one2one 1 retrogene
retro_cfam_25,
Dipodomys ordii ENSDORG00000006675 ortholog_one2one 2 retrogenes
retro_dord_347, retro_dord_411,
Echinops telfairi ENSETEG00000001683 ortholog_one2one 3 retrogenes
retro_etel_469, retro_etel_626, retro_etel_627,
Felis catus ENSFCAG00000004051 ortholog_one2one 1 retrogene
retro_fcat_897,
Homo sapiens ENSG00000063978 possible_ortholog 1 retrogene
retro_hsap_319,
Gorilla gorilla ENSGGOG00000015149 possible_ortholog 2 retrogenes
retro_ggor_1144, retro_ggor_345,
Loxodonta africana ENSLAFG00000007382 ortholog_one2one 1 retrogene
retro_lafr_44,
Microcebus murinus ENSMICG00000001767 possible_ortholog 1 retrogene
retro_mmur_1265,
Myotis lucifugus ENSMLUG00000005969 ortholog_one2one 1 retrogene
retro_mluc_1640,
Mus musculus ENSMUSG00000029110 possible_ortholog 1 retrogene
retro_mmus_522,
Nomascus leucogenys ENSNLEG00000000160 possible_ortholog 2 retrogenes
retro_nleu_1713, retro_nleu_37,
Oryctolagus cuniculus ENSOCUG00000004998 possible_ortholog 2 retrogenes
retro_ocun_1566, retro_ocun_162,
Otolemur garnettii ENSOGAG00000010776 possible_ortholog 1 retrogene
retro_ogar_2121,
Ochotona princeps ENSOPRG00000004317 ortholog_one2one 3 retrogenes
retro_opri_112, retro_opri_783, retro_opri_863,
Procavia capensis ENSPCAG00000004528 ortholog_one2one 1 retrogene
retro_pcap_208,
Pongo abelii ENSPPYG00000025865 possible_ortholog 2 retrogenes
retro_pabe_1240, retro_pabe_36,
Pteropus vampyrus ENSPVAG00000017017 possible_ortholog 1 retrogene
retro_pvam_167,
Sus scrofa ENSSSCG00000008690 ortholog_one2one 1 retrogene
retro_sscr_181,
Ictidomys tridecemlineatus ENSSTOG00000011101 possible_ortholog 2 retrogenes
retro_itri_1108, retro_itri_171,
Tarsius syrichta ENSTSYG00000011244 possible_ortholog 1 retrogene
retro_tsyr_1606,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_33 57.81 100.00
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Download FASTA sequences of all ENSECAG00000024877 retrocopies