Parental gene:

PAICS, ENSDNOG00000013413

Aliases:None
Description:phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase [Source:HGNC Symbol;Acc:8587]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_2730:43936..72208(+)


>ENSDNOG00000013413
GTGCTTTCCCCCAGCCACTTGATTCCTACCTCTATTCCTAGAGCAGTTGTTGCTCCCAGCCCACTCAGCGTAATGGCGAC
AGCTGAGGTACTGAACATTGGTAAAAAGCTCTATGAGGGTAAAACAAAAGAAATCTATGAATTGCTAGATAGTCCAGGAA
AAGTCCTCCTGCAGTCCAAGGACCAGATAACAGCAGGAAATGCAGCTAGAAAGGATCAACTGGAAGGGAAAGCTGCAATC
TCAAATAAAATTACCAGTTGTGTTTTTCAGCTGTTACAAGAAGCAGGTATCAAAACTGCTTTCACTAGAAAATGTGGGGA
AACAGCTTTTATTGCACCCCGGTGTGAAATGATTCCAATTGAATGGGTTTGTAGAAGAATAGCAACTGGTTCCTTTCTCA
AAAGAAACCCTGGCGTTAAGGAAGGATATAAATTTTACCCACCTAAAGTGGAGATGTTTTTCAAGGATGATGCCAATAAT
GATCCACAGTGGTCTGAGGAACAGCTAATTGCTGCAAAATTTTGCTTTGCTGGACTAGTTATAGGCCAAACTGAAGTGGA
TATCATGAGTCATGCTACGCAGGCAATTTTTGAAATATTGGAAAAATCTTGGTTGTCCCAGAACTGTGCACTGGTTGATA
TGAAGATCGAATTTGGTGTTAATATAACCTCCAAAGAAATTGTACTTGCTGACGTTATTGATAATGATTCCTGGAGACTC
TGGCCGTCAGGAGATCGAAGCCAACAGAAAGACAAGCAGTTATATCGTGATCTCAAGGAAGTAACTCCTGAAGGACTCCA
GATGGTAAAGAAAAATTTTGAATGGGTTGCAGACAGACAGTTGCTTCTGAGATCAGAAAGTCGGTGCAGGGTTGTAGTAT
TGATGGGCTCAACCTCTGATCTTGGTCACTGTGAAAAAATTAAGAAGGCGTGTGGAAATTTTGGCATTCCATGTGAACTT
CGGGTAACCTCTGCCCATAAAGGACCAGATCAAACACTGAGGATTAAAGCTGAATATGAAGGGGGATGTATTCGTACAGT
ATTTGTGGCAGTAGCAGGCAGAAGCAATGGTTTAGGACCAGTGTTGTCTGGTAACACTGCATATCCAGTTATCAACTGTC
CTCCCCTCACACCAGAATGGGGAGCTCAGGATGTGTGGTCTTCTCTTCGACTACCCAGTGGTCTTGGCTGTTCGACAATA
CTTTCTCCAGAAGGTTCAGCTCAGTTTGCTGCTCACATATTTGGATTAAACAACCATTTGGTATGGGCTAAACTGCGAGC
AAACATGTTAAACACATGGATTTCCTTGAAGCAGTCTGACAAGAAAATCAGAGATTGCAGTTTA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 88 .29 RPM
SRP012922_cerebellum 50 .31 RPM
SRP012922_heart 46 .64 RPM
SRP012922_kidney 110 .07 RPM
SRP012922_liver 140 .25 RPM
SRP012922_lung 83 .54 RPM
SRP012922_quadricep_muscle 52 .27 RPM
SRP012922_spleen 100 .73 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000010577 ortholog_one2one 1 retrogene
retro_btau_508,
Cavia porcellus ENSCPOG00000010749 ortholog_one2one 1 retrogene
retro_cpor_969,
Echinops telfairi ENSETEG00000015242 ortholog_one2one 2 retrogenes
retro_etel_1918, retro_etel_341,
Homo sapiens ENSG00000128050 ortholog_one2one 3 retrogenes
retro_hsap_3802, retro_hsap_3915, retro_hsap_3927,
Gorilla gorilla ENSGGOG00000024392 ortholog_one2one 1 retrogene
retro_ggor_2643,
Mus musculus ENSMUSG00000029247 ortholog_one2one 6 retrogenes
retro_mmus_1748, retro_mmus_2750, retro_mmus_2858, retro_mmus_3126, retro_mmus_653, retro_mmus_971,
Nomascus leucogenys ENSNLEG00000008786 ortholog_one2one 2 retrogenes
retro_nleu_1274, retro_nleu_2156,
Otolemur garnettii ENSOGAG00000003575 ortholog_one2one 2 retrogenes
retro_ogar_2138, retro_ogar_865,
Procavia capensis ENSPCAG00000008531 ortholog_one2one 1 retrogene
retro_pcap_172,
Pan troglodytes ENSPTRG00000016081 ortholog_one2one 2 retrogenes
retro_ptro_2662, retro_ptro_2670,
Rattus norvegicus ENSRNOG00000002101 ortholog_one2many 3 retrogenes
retro_rnor_1891, retro_rnor_2768, retro_rnor_804,
Tupaia belangeri ENSTBEG00000006751 ortholog_one2one 1 retrogene
retro_tbel_3697,
Tarsius syrichta ENSTSYG00000010497 ortholog_one2one 2 retrogenes
retro_tsyr_2170, retro_tsyr_329,
Drosophila melanogaster FBgn0020513 ortholog_one2many 1 retrogene
retro_dmel_82,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_284 66.79 57.14
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Download FASTA sequences of all ENSDNOG00000013413 retrocopies