Parental gene:

TSPAN3, ENSDNOG00000005619

Aliases:None
Description:tetraspanin 3 [Source:HGNC Symbol;Acc:17752]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:scaffold_432:170026..192914(+)


>ENSDNOG00000005619
ATGGGCCAGTGCGGCATCACCTCCTCCAAGACCGTGCTCGTCTTTCTCAACCTCATCTTCTGGGGGGCAGCTGGTATTTT
ATGCTATGTAGGAGCCTACGTCTTCATCACTTATGATGACTATGACCACTTTTTTGAAGATGTGTATACTCTCATCCCTG
CTGTAGTGATCATAGCTGTAGGAGCCCTGCTTTTCATTATTGGGCTAATTGGCTGCTGCGCCACAATCCGAGAAAGCCAC
TGCGGACTTGCCACGTTTGTCATCATCCTCCTCTTGGTTTTTGTCACAGAAGTTGTTGTTGTGGTTTTGGGATATGTTTA
CAGAGCAAAGNNNNNNNNNNNNNNNNNNNNNNNNATTCAGAAAGTATATAAGACCTACAATGGAACCAGCCCTGATGCTG
CTAGTCGGGCTATTGATTATGTGCAGAGACAGCTGCACTGTTGTGGAATTCACAACTACTCAGACTGGGAAAATACAGAC
TGGTTTAAAGAAACCAAAAACCAGAGTGTCCCTCTTAGCTGTTGTAGAGACACTGCCATCAGCTGTAATGGCAGTCTGGC
CCACCCTTCTGACCTCTATGCTGAGGGGTGTGAGGCTCTAGTTGTGAAGAAGCTACAGGAAATTATGATGCATGTTATCT
GGGCAGCACTGGCATTTGCAGCTATTCAGCTGCTGGGCATGCTGTGTGCATGCATCGTGTTGTGCAGAAGGAGTAGAGAT
CCTGCTTATGAGCTCCTCATCACCGGTGGAACCTATGCATAG

Library Parental gene expression (RPM)
SRP012922_ascending_colon 127 .77 RPM
SRP012922_cerebellum 143 .93 RPM
SRP012922_heart 39 .21 RPM
SRP012922_kidney 192 .75 RPM
SRP012922_liver 71 .83 RPM
SRP012922_lung 132 .72 RPM
SRP012922_quadricep_muscle 105 .75 RPM
SRP012922_spleen 91 .23 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009727 ortholog_one2one 1 retrogene
retro_amel_1275,
Bos taurus ENSBTAG00000002415 ortholog_one2one 2 retrogenes
retro_btau_1089, retro_btau_1650,
Canis familiaris ENSCAFG00000018068 ortholog_one2one 2 retrogenes
retro_cfam_1391, retro_cfam_571,
Choloepus hoffmanni ENSCHOG00000003785 ortholog_one2one 2 retrogenes
retro_chof_162, retro_chof_1682,
Echinops telfairi ENSETEG00000010916 ortholog_one2one 1 retrogene
retro_etel_872,
Felis catus ENSFCAG00000025746 ortholog_one2one 1 retrogene
retro_fcat_1860,
Mustela putorius furo ENSMPUG00000017332 ortholog_one2one 2 retrogenes
retro_mputfur_1641, retro_mputfur_1651,
Pteropus vampyrus ENSPVAG00000004662 ortholog_one2one 1 retrogene
retro_pvam_394,
Ictidomys tridecemlineatus ENSSTOG00000005615 ortholog_one2one 1 retrogene
retro_itri_1268,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_1371 69.72 96.44
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2. retro_dnov_1520 84.11 100.00
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3. retro_dnov_1616 87.59 53.36
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Download FASTA sequences of all ENSDNOG00000005619 retrocopies