Parental gene:

CCT7, ENSCPOG00000019869

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_37:15821640..15834045(-)


>ENSCPOG00000019869
CCCACACCAGTTATACTGTTGAAAGAGGGAACTGACAGTTCCCAAGGCATCCCTCAGCTTGTGAGTAACATCAGTGCCTG
CCAGGTGATTGCCGAGGCTGTAAGAACCACCCTAGGTCCCCGTGGCATGGACAAGCTTATTGTGGATGGCCGAGGCAAGG
CAACAATTTCTAATGATGGGGCCACAATTTTGAAACTTCTTGATGTCGTCCATCCTGCAGCAAAGACTTTAGTGGACATT
GCCAAATCCCAAGATGCTGAGGTTGGTGATGGTACCACCTCAGTAACCCTGCTGGCTGCAGAATTTCTGAAGCAGGTGAA
ACCATATGTGGAGGAAGGTTTGCACCCCCAGATCATCATCCGAGCTTTCCGCACAGCCACACAGTTGGCAATTAACAAGA
TCAAAGAGATTGCTGTAACTGTGAAGAAGCAAGATAAAGTGGAGCAGAGGAAACTGCTGGAGAAGTGTGCCATGACAGCT
CTGAGCTCCAAGCTGATATCCCAGCAGAAAGCCTTCTTTGCTAAGATGGTGGTTGATGCTGTGATGATGCTTGATGATTT
GCTGCAGCTTAAAATGATTGGAATCAAGAAGGTACAGGGTGGAGCCCTAGAGGAGTCTCAGCTGGTGGCCGGTGTGGCAT
TCAAGAAGACTTTCTCTTACGCTGGGTTTGAAATGCAACCTAAAAAGTATAATAACCCCATGATCGCCTTATTAAATGTT
GAACTTGAGCTGAAAGCTGAGAAAGACAATGCTGAAATCAGAGTCCATACAGTGGAGGATTATCAGGCAATTGTTGATGC
TGAGTGGAACATTCTCTATGACAAGTTAGAGAAGATCTACAATTCTGGAGCCAAAGTTGTTTTATCCAAACTCCCTATTG
GGGATGTAGCCACCCAGTACTTTGCTGATAGAGACATGTTCTGTGCCGGGCGGGTACCTGAGGAAGATTTGAAGAGGACA
ATGATGGCCTGTGGAGGTTCGATCCAGACCAGTGTGAATGCTCTATCAGCAGATGTGCTGGGCCGCTGCCAGCTATTTGA
AGAAACCCAGATTGGAGGTGAAAGGTACAATTTCTTCACTGGTTGCCCCAAGGCCAAGACTTGCACCTTCATCCTCCGTG
GCGGTGCTGAGCAGTTTATGGAGGAGACAGAGCGGTCTCTGCATGACGCCATCATGATCGTCAGACGGGCCATCAAGAAT
GATTCAGTGGTGGCTGGTGGTGGGGCCATCGAGATGGAGCTCTCTAAGTACCTGCGGGATTACTCAAGGACTATCCCAGG
AAAACAGCAGCTACTGATTGGAGCATATGCCAAGGCCTTGGAGATTATCCCACGTCAGCTATGTGACAATGCTGGCTTTG
ATGCCACAAACATCTTGAACAAACTGCGGGCTCGGCATGCCCAGGGGGGCATGTGGTATGGGGTGGACATCAACAATGAG
GACATTACTGACAACTTTGAAGCCTTTGTGTGGGAGCCAGCTATGGTGCGGATCAATGCCCTCACAGCAGCCTCTGAGGC
TGCATGCCTTATCGTGTCTGTGGATGAGACCATCAAGAACCCTCGCTCCACTGTGGATGCTCCTCCAGCAGCTGGCCGGG
GCAGGGGCCGGGGCCGC

Library Parental gene expression (RPM)
SRP017611_brain 124 .29 RPM
SRP017611_kidney 163 .52 RPM
SRP017611_liver 98 .33 RPM
SRP040447_lung 151 .73 RPM
SRP040447_skeletal_muscle 108 .58 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000008879 ortholog_one2many 1 retrogene
retro_cfam_151,
Homo sapiens ENSG00000135624 ortholog_one2one 1 retrogene
retro_hsap_3354,
Gorilla gorilla ENSGGOG00000007766 ortholog_one2many 1 retrogene
retro_ggor_2274,
Macropus eugenii ENSMEUG00000000416 ortholog_one2one 1 retrogene
retro_meug_1995,
Macaca mulatta ENSMMUG00000012448 ortholog_one2many 1 retrogene
retro_mmul_2093,
Nomascus leucogenys ENSNLEG00000010414 ortholog_one2one 1 retrogene
retro_nleu_1175,
Otolemur garnettii ENSOGAG00000009162 ortholog_one2one 2 retrogenes
retro_ogar_2001, retro_ogar_2698,
Pongo abelii ENSPPYG00000012297 ortholog_one2one 1 retrogene
retro_pabe_2760,
Pan troglodytes ENSPTRG00000012060 ortholog_one2one 1 retrogene
retro_ptro_2133,
Rattus norvegicus ENSRNOG00000015630 ortholog_one2one 2 retrogenes
retro_rnor_2179, retro_rnor_535,
Tupaia belangeri ENSTBEG00000002066 ortholog_one2one 2 retrogenes
retro_tbel_3708, retro_tbel_3751,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_1458 89.26 99.81
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Download FASTA sequences of all ENSCPOG00000019869 retrocopies